Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02024 atgGTGTTATCAGCTTCGTCATGTTCTCTAACGAGAAGCTCGTTGGAAGAGATGTTAGAATCACTTCGTCGGATGGATGAGGaacaagagaagaagaaggactTACCTCCAGCTTTGCCATCTCGGCCGGCGTCTAAGGCGAGGCTTCCTCGGGCGAGGCGGTCGTTGCCGAATAATTTTAAGGTTGAGAATGGTTTTATTGACAATGTGGAAAGTAAGAGGAAGGAGATATTAACATCGACATCAGAATGTTCTGAATATATGAGAAGTGATAGCAGTTTTGGGAGGAAGAGGGTGAAGAAGGATGTTGTGGAGTCACCTTATGTGGCAGCAATTCCAGAATTGGATGGTGACACTATTTCTTATTTCATCAAAATGAAGCTTCGCGTTTGGTGTAGACAACCAAGAGGGCAATGGGAGCTAGGTTCAATACAATCAACTTCGGGAGAAGAAGCTTCCGTTTCACTATCAAATGGAAAAGTCCTGAAAATGGCTAGATCAGAACTCGTACCAGCTAATCCTGATATTTTAGAGGGTGCGGATGACCTTATCAAAATCGCTTATTTGAATGAGCCATCTGTTCTTCACAATCTTAGGTTTAGATATTCCAGGGAGTTGATTTATAGTAAAGCAGGTCCCGTTTTAATTGCACTCAATCCTTTCAAAGATCTCCAGATTTATGGAAATGATTATGTCAACACTTATAggcagcaacttgttgatactCCTCATGTTTATGGTATGGTAGATGCTGCTTATAACCAGATGATGAGAGATGAAGTAAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGAAAGACAGAGACAGCTAAAATTGCTATGCAATACTTAGCTGCTCTTGGTAGTAGCAATAGTGGGAGAGCAAATGATGTTCTTCAGACAAATTGTATACTAGAAGCTTTTGGGAATGCAAAAACGTCTGTAAATGACAACTCTAGCAGATTTGGAAAGTTTATTCAAATTCATTTCAGTGCCATGGGTAAAATATGCGGGGCTAAAATTCAAACCTATTTGTTGGAAAAGTCGAGAGTTGTTCAAATGGCCAATGGCGAGAGGTCGTTTCACGTATTTTATCAACTTTGTGCTGGATCTTCATCTAGTCTTAAAGAGAGACTAAATCTTAGAGCAGCCTgtgaatataaatatttaaatcaaagtgACTGCATGACAATTGGTGGTATTGATGATGCTAAAAACTTTCATCAGCTGAAGAAAGCATTTGATGCTGTTCGAATTTGTAATGAGGACCAAGACCTGATCTTTAAGATGCTTGCTGCAATACTATGGCTGGGAAATATATCATTCAAAGTTATTGACAGTGGAAATCACATTGAGGTTATGAGTGATGAAGCTGTAACCAGTGCTGCCATGCTGATGGGTTGCAGTTCCCAGGAATTAATAACAGCATTATCTACCCATAAAATCCAACCTGGCGAGGAGACTGTTGCCAAAAGTTTGACATTATTGCAGGCAATTGAAACAAGAGATGCAATTGCCAAATTTATTTATGCAAGCTTGTTTGAATGGCTTGTACAACAAGTTAACAAGTCACTTGAAGTGGGTGAAAAACATACAGAGAAATTCATTAGTATCCTTGATTTTTATGGGTTTCAGTCATTCCAGAAGAACAACTTTGAACATTTTTGCATAAATTATGCCAATGAGAGGCTTCAACAACATTTTAATCGGCATCTGTTTAAACTGGAGCAGGAGGACTGTGAATTGGACGGCATTGTTTGTACAGTGTTAAATTTTGAGGACAATCAGGAGTGCTTGGATCTATTTGAGAAGAAACCTCTCAGTCTATTCTCTTTGTTGGATGAGGAATCAAATTTCGACGAGGCTTCTGATTTAACATTTGCCAACAAACTGAAGAATCTCCTGGATGCTAATAATTGCTTCAAAGAGGAAAGAGGCGGAGCTTTCAGTGTTCGTCATTATGCAGGGGAGGTTTTGTATGATACAAATGGCTTTATAGAAAAGAACAGAGATACAGTGTCTTCTAATTCCATTCAACTCATTTCATCATGTAATTGTGAACTGCTGCATTTGTTCTCCAAAGTGTTTAACCAATCTGAGGAGCATGGAAATTCCACTTTCCATTTTGATGCACTATACTCACAGAAGAGAGGTGTTGGAACAAACTTCAAGGATCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACTCCTCACTTTATTCGCTGTATAAAACCAAATATTAAGAAGCATCCTGGAATTTATGACAATGAACTTGTCCTACAACAGCTCAGATCTTGTGGAGTCCTAGAAGCTGTTAGAATTTCAAGGGCTGGATATCCTACTCGAATGAACCATCAAGAGTTTTCCAGGAGGTACGAGTTTCTGCTTTCTGGGACTGATGTACCTCGGGATCCGTTGAGCATCTCAGTTGCTGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTACCAAGTTGGCTACACGAAACTGTATCTTCGAGCAGCGCAGATTGGTGCCTTGGAGGATAAGAGAAAACAGTTTTTGCAGGGAACTCTTCGGATTCAAAAATGCTTCCGTGGTCATCAAGCTCGTAGTTATTTCTGTGAACTTAAGAATGGAGCGACAATATTACAATCATTTATTCGTGGAGAAATTACAAGAAGGAAACATGGTGTTTTGATGAAATCTTCCATAAccatttattctaaaaaatttgAGGAGATTCATGCAATCATATTACTTCAGTCTGTGATTCGTGGGAGGCTGGTTCGTAGGGATTCTAGTTACAACAATAAATTGAGGAAAAATCACGATAATGCAGAACATAGACTGGAGTCTCATGTTAGCATGCTAGAAGTTAAGGATTTGTCCAAAGAGCTGGTTGAGAACATGCCTTCAGCTTTAGTAGAACTCCGGAAACGAGTGTACAGCGCCGAAGCAATTGTCAAGCAAAAGGAAGAGGAAAATACTGAATTGAGGGAAAAGTTAAAACAATCTGAAAGAAAGAGGGTTGAATATGAAGCGAAGATGAAGTCAATGGAGGAGGCATGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCCACTAGAAAGAACCATGCTTCAGAGAATGGCACTGTTCAACCTGTAAGACATGATCTTGTGTCACCTCGCTACTATGATTCTGAAAATGCTACTTCCATGGAATCTCGAACAACTGATGGGAGCACACCTATGAAGCTTTCGGATTGTTTTTCGGTCTCTGATGCTGGGAGGCAGGCTAATGATGCTTTGACTACAGTGAGCAATCTGATGAAAGAATTTGAGCAGCGAAGACAGACCTTCAATGATGAAGTTAAAGCTTTGAATGAGGTTAAACCAGGGCAGTCTGCCAACACAAATTCCGCTGATGAACTTCGGAAACTTAAGCAAAGATTTGAGGGATGGAAAAAACAATACAAGGTTAGATTACGGGAGACAAAAGCAAGGCTTTCCGAAACCGAAAAAAGTCGACGGACATGGTGGGGGAAATTAAGCTTGAAAGCATAA 3546 0.3906 MVLSASSCSLTRSSLEEMLESLRRMDEEQEKKKDLPPALPSRPASKARLPRARRSLPNNFKVENGFIDNVESKRKEILTSTSECSEYMRSDSSFGRKRVKKDVVESPYVAAIPELDGDTISYFIKMKLRVWCRQPRGQWELGSIQSTSGEEASVSLSNGKVLKMARSELVPANPDILEGADDLIKIAYLNEPSVLHNLRFRYSRELIYSKAGPVLIALNPFKDLQIYGNDYVNTYRQQLVDTPHVYGMVDAAYNQMMRDEVNQSIIISGESGSGKTETAKIAMQYLAALGSSNSGRANDVLQTNCILEAFGNAKTSVNDNSSRFGKFIQIHFSAMGKICGAKIQTYLLEKSRVVQMANGERSFHVFYQLCAGSSSSLKERLNLRAACEYKYLNQSDCMTIGGIDDAKNFHQLKKAFDAVRICNEDQDLIFKMLAAILWLGNISFKVIDSGNHIEVMSDEAVTSAAMLMGCSSQELITALSTHKIQPGEETVAKSLTLLQAIETRDAIAKFIYASLFEWLVQQVNKSLEVGEKHTEKFISILDFYGFQSFQKNNFEHFCINYANERLQQHFNRHLFKLEQEDCELDGIVCTVLNFEDNQECLDLFEKKPLSLFSLLDEESNFDEASDLTFANKLKNLLDANNCFKEERGGAFSVRHYAGEVLYDTNGFIEKNRDTVSSNSIQLISSCNCELLHLFSKVFNQSEEHGNSTFHFDALYSQKRGVGTNFKDQLFKLMHQLESTTPHFIRCIKPNIKKHPGIYDNELVLQQLRSCGVLEAVRISRAGYPTRMNHQEFSRRYEFLLSGTDVPRDPLSISVAVLQKFNIPSEMYQVGYTKLYLRAAQIGALEDKRKQFLQGTLRIQKCFRGHQARSYFCELKNGATILQSFIRGEITRRKHGVLMKSSITIYSKKFEEIHAIILLQSVIRGRLVRRDSSYNNKLRKNHDNAEHRLESHVSMLEVKDLSKELVENMPSALVELRKRVYSAEAIVKQKEEENTELREKLKQSERKRVEYEAKMKSMEEAWQKQMASLQMSLVATRKNHASENGTVQPVRHDLVSPRYYDSENATSMESRTTDGSTPMKLSDCFSVSDAGRQANDALTTVSNLMKEFEQRRQTFNDEVKALNEVKPGQSANTNSADELRKLKQRFEGWKKQYKVRLRETKARLSETEKSRRTWWGKLSLKA 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02024 1181 ProSiteProfiles Myosin motor domain profile. 178 849 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 Coils Coil 934 954 - -
Tsu08g02024 1181 SMART iq_5 873 895 IPR000048 GO:0005515
Tsu08g02024 1181 SMART iq_5 850 872 IPR000048 GO:0005515
Tsu08g02024 1181 SMART iq_5 910 932 IPR000048 GO:0005515
Tsu08g02024 1181 PANTHER MYOSIN 101 1180 - -
Tsu08g02024 1181 Coils Coil 972 1020 - -
Tsu08g02024 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 898 IPR027417 -
Tsu08g02024 1181 PANTHER MYOSIN-2 ISOFORM X1 101 1180 - -
Tsu08g02024 1181 Coils Coil 1149 1169 - -
Tsu08g02024 1181 Coils Coil 12 35 - -
Tsu08g02024 1181 Pfam IQ calmodulin-binding motif 877 894 IPR000048 GO:0005515
Tsu08g02024 1181 Pfam IQ calmodulin-binding motif 913 929 IPR000048 GO:0005515
Tsu08g02024 1181 Pfam IQ calmodulin-binding motif 856 871 IPR000048 GO:0005515
Tsu08g02024 1181 SMART MYSc_2a 172 850 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 Coils Coil 1104 1124 - -
Tsu08g02024 1181 ProSiteProfiles IQ motif profile. 874 903 IPR000048 GO:0005515
Tsu08g02024 1181 Gene3D - 782 850 - -
Tsu08g02024 1181 Gene3D Kinesin motor domain 181 778 IPR036961 -
Tsu08g02024 1181 Pfam Myosin head (motor domain) 181 837 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 PRINTS Myosin heavy chain signature 262 287 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 PRINTS Myosin heavy chain signature 208 227 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 Gene3D Myosin VI head, motor domain, U50 subdomain 422 717 - -
Tsu08g02024 1181 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 125 174 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tsu08g02024 1181 ProSiteProfiles IQ motif profile. 853 879 IPR000048 GO:0005515
Tsu08g02024 1181 MobiDBLite consensus disorder prediction 24 54 - -
Tsu08g02024 1181 Gene3D - 853 901 - -
Tsu08g02024 1181 CDD MYSc_Myo8 192 837 IPR036022 -
Tsu08g02024 1181 Gene3D - 361 420 - -
Tsu08g02024 1181 Gene3D - 547 739 - -
Tsu08g02024 1181 ProSiteProfiles IQ motif profile. 911 940 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02024 Tsu-Chr8 26491575 26505926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02024 1 1176 Myosins gene family AT5G54280 55.429 0.0 1318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02024 08 26491575 26505926 Tsu08g02024 08 26491575 26505926 ECH