Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g02001 | ATGATAATCGAACCCTTGGATTTGCTTCGTTCCAATCTCTCTCGTGTTCGGATCCCGGAACCTACCAATCGCATCTTCAAGCACGAATGTTGTGTTTCTTACGACACACCGAGGTCAGATGGTGGGCTGTTCATCGATTTGTACACTTTTCTTGCTTTCGGAAAGGATTATGTTGGTTGGAATTATGAGAAGACTGGAAATCCTGTCTATTTGCATATAAAACAGACAAAGAAGTTAGTTCCAGAAGATAGGCCTTCTAAGAAACCAACTCTATTGGCTATAGGTCTCAATGGGGGATTTGACAACGATGAGCCTGAATATGAAGAAACTCATAGTATAGTTATATTACCTGAGTATGTGTCTCTTTCATTCCCTTCTGTGGAATTGCCAGAGAAGGTAAGGTTGGCCGTTGATGCAATCTTACTAGCCGACGGTGCTGAACGTAAGGAGCAACTTGCAGCTTGGGCAGCTGATGAGAAACAAGTTAGTGCCTATGCAATGAATTTACAACAGATTAACAATGACGTTGttattccaccatctgggtggaaATGTGCTAAGTGTGATAAGAAAGACAATCTATGGCTAAATCTAACTGATGGAATGATTCTTTGTGGGAGGAAAAACTGGGATGGAAGTGGGGGGAATAACCATGCTATTGAGCATTATGAACAAACAAGATATCCTCTTGCTGTAAAGCTTGGGACTATTACTGCTGATCTGGAAGCAGCAGATGTTTACTCCTATCCAGAGGATAACAGTGTCTTGGATCCACAGTTAGCACAACATTTGGCCTTTTTTGGCATTGATTTTTCATCACTTCAAAAGACTGAAATGACAACCGCTGAAAGAGAACTTgaccaaaatacaaattttgATTGGAACCGAATCCAAGAAAGTGGACAAGAAGTTGAGCCAATTTTTGGACCTGGTTATACAGGATTGGTCAACATTGGAAACAGttGTTACATGGCAGCAACTATGCAAGTTGTGTTTTCAACAAGATCATTCATATCATGGTACTACTTGAACCAAAGTCTAAAGAAGGCATTTGAGTTGTCTCCTGCTGATCCAACTGTAGACCTGAATATGCAGTTGACAAAATTGGCGCATGGTTTACTTTCTGGGAAATACTCTCTTCCAGAGTTTAAGAATGACGAAAAAGAAATTTTGGCTACCTCAACTACAACTGCTAAACAAGAAGGAATACGACCAAATATGTTCAAAGCTGTAATTGCTGCCAGCCATCCTGAATTTTCATCTATTCGGCAACAGGATGCTTTAGAATTTTTCCTACATTTTCTTGACCGAGTTGAACAAGCTAATGCTGGGAAAACTGAACTGAATCCTGCAAACAGTTTCAAATTTGGTATTGAAGATAGAATTTCATGTTCATCTGGAAAAGTTACATATAGTAGAAGGGATGATTACATTCTTTCTCTCAATATCCCATTGCATGAAGCAACTAACAAAGAAGAATTAGAGTCCTTTCACAAACTCAAAGCAGAGAAACTTGCAGAAGGAAAGGATCTATCTGGCGATGAGATTGTGCGTCCAAGGGTGCCTTTGGAAGCTTGCCTTGCAAACTTCTCTGCTCCTGAGGATATACATGATTTTTACAGTACTGCTTTGAAAAGAAAGACAACAGCACTGAAGACTGCTGGTTTTACCTCATTTCCTGATTACCTGGTGTTACACATGCGAAGATTTGTTATGGAGGCAGGATGGGTGCCCAAAAAACTTGATGTGTATATTGATGTTCCTGATATCATAGATATCAGTCATATGCGCAGCAAAGGTCGCCAGGATGGTGAAGAGCTATTACCTGATGGGGTACCAAACGAGGAAGACTCGAATAAACCTTCAGCCAATGAAAAAATCGTCTCTCAACTTGTTTCGATGGGCTTTAATCATCTCCATTATATCGACATTCCTATTTACGAAGGCCATGGCTCTGAAGCTTTGACAATTCTCGACCAATCAAAAGTTGATACTCTACTTTCATTTGGGTTTCAAGAAAATATTGCTCGAAAGGCGCCGAAGGCATCGGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGAGGCATCAGTCTCCAGTAGTATGGATACTGTCACATCAGACATTGCATCCATTTCCCGTGATGTTGGCCTGCCTGATGGAGGAGGGAGATATCAACTTATGGGAGTTGTTAGCCACAGTGGAACCTCTACGCTGTGTGGCCATTACGTTGCTCATGTTTTAAAAGATGGTAGATGGGTTATTTTCAATGACAACAAGTGCACCTCCTTTACAAGTCCAGCACGAGATAAG | 2325 | 0.4017 | MIIEPLDLLRSNLSRVRIPEPTNRIFKHECCVSYDTPRSDGGLFIDLYTFLAFGKDYVGWNYEKTGNPVYLHIKQTKKLVPEDRPSKKPTLLAIGLNGGFDNDEPEYEETHSIVILPEYVSLSFPSVELPEKVRLAVDAILLADGAERKEQLAAWAADEKQVSAYAMNLQQINNDVVIPPSGWKCAKCDKKDNLWLNLTDGMILCGRKNWDGSGGNNHAIEHYEQTRYPLAVKLGTITADLEAADVYSYPEDNSVLDPQLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPIFGPGYTGLVNIGNSCYMAATMQVVFSTRSFISWYYLNQSLKKAFELSPADPTVDLNMQLTKLAHGLLSGKYSLPEFKNDEKEILATSTTTAKQEGIRPNMFKAVIAASHPEFSSIRQQDALEFFLHFLDRVEQANAGKTELNPANSFKFGIEDRISCSSGKVTYSRRDDYILSLNIPLHEATNKEELESFHKLKAEKLAEGKDLSGDEIVRPRVPLEACLANFSAPEDIHDFYSTALKRKTTALKTAGFTSFPDYLVLHMRRFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGRQDGEELLPDGVPNEEDSNKPSANEKIVSQLVSMGFNHLHYIDIPIYEGHGSEALTILDQSKVDTLLSFGFQENIARKAPKASGGDIEKATDWIFNNPEASVSSSMDTVTSDIASISRDVGLPDGGGRYQLMGVVSHSGTSTLCGHYVAHVLKDGRWVIFNDNKCTSFTSPARDK | 775 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g02001 | 775 | Pfam | UBA/TS-N domain | 659 | 694 | IPR015940 | - | |
| Tsu08g02001 | 775 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 104 | IPR013083 | - | |
| Tsu08g02001 | 775 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 657 | 697 | IPR015940 | - | |
| Tsu08g02001 | 775 | SMART | Zf_UBP_1 | 184 | 239 | IPR001607 | GO:0008270 | |
| Tsu08g02001 | 775 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 258 | IPR013083 | - | |
| Tsu08g02001 | 775 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 313 | 771 | IPR001394 | GO:0004843|GO:0016579 | |
| Tsu08g02001 | 775 | PANTHER | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 15 | 774 | - | - | |
| Tsu08g02001 | 775 | PANTHER | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 15 | 774 | - | - | |
| Tsu08g02001 | 775 | CDD | Peptidase_C19B | 314 | 764 | - | - | |
| Tsu08g02001 | 775 | Pfam | Zn-finger in ubiquitin-hydrolases and other protein | 185 | 259 | IPR001607 | GO:0008270 | |
| Tsu08g02001 | 775 | Gene3D | - | 648 | 703 | - | - | |
| Tsu08g02001 | 775 | PIRSF | UBP | 8 | 644 | IPR016652 | GO:0004843|GO:0016579 | |
| Tsu08g02001 | 775 | PIRSF | UBP | 641 | 775 | IPR016652 | GO:0004843|GO:0016579 | |
| Tsu08g02001 | 775 | ProSiteProfiles | Zinc finger UBP-type profile. | 161 | 271 | IPR001607 | GO:0008270 | |
| Tsu08g02001 | 775 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 1. | 314 | 329 | IPR018200 | GO:0004843|GO:0006511 | |
| Tsu08g02001 | 775 | SUPERFAMILY | Cysteine proteinases | 309 | 768 | IPR038765 | - | |
| Tsu08g02001 | 775 | Pfam | Variant UBP zinc finger | 16 | 78 | IPR041432 | - | |
| Tsu08g02001 | 775 | SMART | uba_6 | 659 | 696 | IPR015940 | - | |
| Tsu08g02001 | 775 | SUPERFAMILY | RING/U-box | 163 | 271 | - | - | |
| Tsu08g02001 | 775 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 2. | 729 | 747 | IPR018200 | GO:0004843|GO:0006511 | |
| Tsu08g02001 | 775 | Gene3D | Cysteine proteinases | 306 | 775 | - | - | |
| Tsu08g02001 | 775 | MobiDBLite | consensus disorder prediction | 601 | 621 | - | - | |
| Tsu08g02001 | 775 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 313 | 775 | IPR028889 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g02001 | Tsu-Chr8 | 26172370 | 26197073 | Wgd |