Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01989 ATGTTACATATTTGGttcttattattcttttacATAAGAACATGCACATCATTAGATAGTTTAACATTAAACCAATCTCTCAAAGATGGCCAAACTTTAGTTTCATCTGATGGAACATTTGAGCTTGGTTTCTTCAGTCCAAGAGATTCAACAAATGGATATTTGGGTCTATGGTTCAGAAACGTGTCACCTCAAACACTTGTTTGGGTGGCAAACAGAGAATCACCACTTCATAACAATTCAAGAGGATTCTTAAGAATCAATTCAAAAGGTGTTCTTATGGTTCTTAATGGAAAAAACACCATTGTTTGGTCCTCTAATGTTACAACCAAAGAAGTGATCAACAACCCAATTGCACGTGTGTTGGATTCTGGTAATCTTGTGGTACAAAATGGAAATAATTCTAAAGAGGAATATTTTTTATGGCAGAGTTTTGATTACTTGTGTGACACGTTATTGTTAAATGGGATGAAACTTGGATGGGATTTAGTAACTGGTcatgaaatatttttatcatcttggaaaaaaaatgatgatcCATCTATAGGTGAGTATTCTCTAAGAATTTACCGTATGGGATATCCAcaacttttcaaattcaaaggGTTAGAGAGAAAATTTAGAATAGGATCATGGAATGGTCTTGGTTTTAGTGGATATCCAACTCATTTACTCAAACAACTACAAAGATTTAGGTTTGTTTTCGATGAAAAACAAGTTTATATCGAGAGTGAAATCCTCGATCGATCGATAACGGTGATTTACCGACTTACCCCTTTAGGCCATGGAGAACTTTCAGTTTGGACAAGTATGACAAGAAACTGGAAAGTGATTTCAACTGGTGAGGAAGATGAGTGTGAAAACTATGCACTGTGTGGTACTTATTCTATATGCATTATGGATGGAAATGCTCCAACTTGTGAATGCATGAAAGGGTATATTCCTAAGTTTCCTAAACAATGGAATATATCATTTTGGTCTAATGGTTGTGTTCCGAAGAATAAGTCTAATTGCGAAAATAGTTACAAAGATGGGTTCTTGAGGTATAGTAAAATGAAATTGCCAGACACGTCTTCCTCATGGTTTAGTAAGATCATGGATCTTGATGAATGTAGGAATTCGTGTCTAAAAAATTGTTCATGTTCAGCGTATGCAAATTTGGATATCCGTAATGGTGGAAGCGGTTGTCTGCTCTGGTTCGATGAACTAGTTGATGTAAGGAAGTTTTCTCAATGGGGACAAGACCTTTATGTTAGAGTCCCTACTTCTCAACTAGGtaccaaatttatttattctccTTTTtaTTTACTGTATATGATATTGTTgatcttttcttttattttcaaccAATCTATGGCAGAAAGAATATTTTATAAGAAGcattatgaaaatatattcaAGAGAGAAGACACAGATCCACAAACATTTGATTTTCAAATCATAGCTCAAGCCACTGGAAACTTTTCAAGAAGCAACAAATTGGGTGAAGGTGGCTTTGGACCAGTATATAAGGGTACACTAAGATGTGGACAAATATTAGCAGTAAAAAGACTTTCAAATGATTCTGGACAAGGTTTGGAGGAGTTCAAAAATGAAATGGCAGTAATTGCCAAGCTTCAGCACCGTAACCTCGTCAAGCTTCTTGGTTACTGCATTCAAGGAGAAGAAGTAATGTTGATCTATGAATACATGCCGAACAAAAGCttagacaattttatttttgATGAAACTAGAAGCAAACTCTTGGCCTGGTCGAAGCGTTCTCATATTATTGCTGGCATTGCTAGAGGACTTCTTTATCTCCACCAAGATTCTAGACTTAGAATTATTCACAGAGATTTAAAGTTAAGCAATATCTTGCTAGATGCCCATATGAATCCAAAAATCTCAGATTTTGGTCTGGCTCGGACATTTTGTGGCGATCAAGTTGAAGCCAAAACAAGAAAATTGGTTGGAACATATGGTTACATGCCTCCAGAGTATGCTGTACATGGTCGTTACTCCATGAAATCAGATGTGTTTAGTTTTGGCGTAATAGTATTGGAGATAATCAGCGGGAATAAGATCAAGGGCTTTTATGACCCAACACACTCTCTCAACCTTCTTGGATATGCTTGGAGACTCTGGATTGAAAACATGCCATTGGAACTACTAGATACACATTTACTTGATATGTGCATTTCTTCTGAAGTCATTCGATGCATACATGTGGGGCTATTATGTGTACAACAAAAGCCCGAAGATAGGCCATGCATGTCCTCTGTCATTCTGATGTTGAATGGTGAGAAATTGTTGCCTCAACCGAAGGCTCCTGGATTTTATACTGGCAAGGGTTCAAATGAAACCCCGTCCTCATCCTCGAATCATATGTCAGTTACAATTTTTGAGGCAAGATAG 2397 0.3496 MLHIWFLLFFYIRTCTSLDSLTLNQSLKDGQTLVSSDGTFELGFFSPRDSTNGYLGLWFRNVSPQTLVWVANRESPLHNNSRGFLRINSKGVLMVLNGKNTIVWSSNVTTKEVINNPIARVLDSGNLVVQNGNNSKEEYFLWQSFDYLCDTLLLNGMKLGWDLVTGHEIFLSSWKKNDDPSIGEYSLRIYRMGYPQLFKFKGLERKFRIGSWNGLGFSGYPTHLLKQLQRFRFVFDEKQVYIESEILDRSITVIYRLTPLGHGELSVWTSMTRNWKVISTGEEDECENYALCGTYSICIMDGNAPTCECMKGYIPKFPKQWNISFWSNGCVPKNKSNCENSYKDGFLRYSKMKLPDTSSSWFSKIMDLDECRNSCLKNCSCSAYANLDIRNGGSGCLLWFDELVDVRKFSQWGQDLYVRVPTSQLGTKFIYSPFYLLYMILLIFSFIFNQSMAERIFYKKHYENIFKREDTDPQTFDFQIIAQATGNFSRSNKLGEGGFGPVYKGTLRCGQILAVKRLSNDSGQGLEEFKNEMAVIAKLQHRNLVKLLGYCIQGEEVMLIYEYMPNKSLDNFIFDETRSKLLAWSKRSHIIAGIARGLLYLHQDSRLRIIHRDLKLSNILLDAHMNPKISDFGLARTFCGDQVEAKTRKLVGTYGYMPPEYAVHGRYSMKSDVFSFGVIVLEIISGNKIKGFYDPTHSLNLLGYAWRLWIENMPLELLDTHLLDMCISSEVIRCIHVGLLCVQQKPEDRPCMSSVILMLNGEKLLPQPKAPGFYTGKGSNETPSSSSNHMSVTIFEAR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01989 798 ProSiteProfiles Protein kinase domain profile. 488 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01989 798 Coils Coil 794 798 - -
Tsu08g01989 798 SMART ntp_6 341 420 IPR003609 -
Tsu08g01989 798 Gene3D - 14 145 IPR036426 -
Tsu08g01989 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Tsu08g01989 798 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 796 - -
Tsu08g01989 798 Pfam D-mannose binding lectin 66 175 IPR001480 -
Tsu08g01989 798 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 180 IPR036426 -
Tsu08g01989 798 PIRSF SRK 1 798 IPR024171 GO:0004674
Tsu08g01989 798 MobiDBLite consensus disorder prediction 775 798 - -
Tsu08g01989 798 Pfam PAN-like domain 338 406 IPR003609 -
Tsu08g01989 798 Gene3D Hepatocyte Growth Factor 337 417 - -
Tsu08g01989 798 Pfam Protein tyrosine and serine/threonine kinase 491 704 IPR001245 GO:0004672|GO:0006468
Tsu08g01989 798 SMART serkin_6 488 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01989 798 SMART blect_4 24 148 IPR001480 -
Tsu08g01989 798 CDD STKc_IRAK 494 761 - -
Tsu08g01989 798 Gene3D Transferase(Phosphotransferase) domain 1 564 766 - -
Tsu08g01989 798 CDD B_lectin 24 147 IPR001480 -
Tsu08g01989 798 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 11 796 - -
Tsu08g01989 798 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Tsu08g01989 798 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Tsu08g01989 798 Gene3D Phosphorylase Kinase; domain 1 449 563 - -
Tsu08g01989 798 CDD PAN_AP_plant 335 421 - -
Tsu08g01989 798 SUPERFAMILY Protein kinase-like (PK-like) 471 779 IPR011009 -
Tsu08g01989 798 ProSiteProfiles EGF-like domain profile. 282 319 IPR000742 -
Tsu08g01989 798 MobiDBLite consensus disorder prediction 777 798 - -
Tsu08g01989 798 ProSiteProfiles Bulb-type lectin domain profile. 18 142 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01989 Tsu-Chr8 25925193 26003105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01989 471 793 Receptor kinase-like Gene Family AT4G05200 57.012 1.78e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01989 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01989 08 25925193 26003105 Tsu08g01989 08 25925193 26003105 ECH