Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01938 ATGGACATGACCTCAAGAAACATAGATGCAGATTCTCAAACAccatcatcaaaacaacaaccCAACAATAACATAACACCAACAACAACCTTAAAGTCTTCACCTTTCACAAACGGAACACATAAACGCCActacacaacaacaacaacaacaaccaccgctacaccaccaccaccaccgccacATATGAGTTTTTGTTACAAAGAATGTCTCAAGAATCATGCTGCTTCCTTAGGTGGACATGCTCTTGATGGATGTGGTGAATTCATGCCATCCATTATTTCTAATGACCCTAGATCTCTTAAATGTGCTGCTTGTGGTTGTCACCGTAATTTCCACCGCCGTGAATCACAAGAACACATCATCACCACCACTAGCACCACCActcccaccaccaccaccaccacaaccaccaaCAATAACACTTATCTTAGCTGCATCTACACAAGTACCCCATCAACAACAGttccaccaccacaaccaccaccGCCATTACAACTACCACACCGTGGACCCATTAGTCAAAGCACTAGCCCAAGTCAAAGTACAAGCCCAAGTCATAGCCCAAGCCCAATTTCAAGCCCATCTTCACCACCACCACTCTCACATGTACCACCTTCTTACCATTCTTCAGCACCACACATGCTCTTAGCACTTGGAGGAAATCCTTATTCAACAGTAACACCATCACACTCTGATCATGATCAACACCAAAATCATCTTCAAAGAAATCTCAATTTTGCTTCATCTGTTGTTAAGCtcgaaaacaacaacaacaacaacaacatcaacaacaacacaaGTAGTGGGAAAAAGAGATACAGGACAAAATTCAGCAAGGAACAAAAAGAGAAGATGCATGGATTTTCAGAGAAATTGGGATGGAGAATGCAAAAGGGTGATGATGGATTAGTTCAAAAATTCTGCAATGACATTGGTGTTTCAAGAGGGGTATTCAAAGTTTGGATGCATAACAACAAGAATAATAGTTTGAGGAAAAGATCAGAATCTAATGTTggaattggaattggaattgCTACTCAAGGTGATAACAAGAacaatgatgataataatgatagaTCCAACAATGTGATTCATATGAATGAAGATGGGTGTGTCAATGTTCGTGTTGTTTCTTCTGTTGATGGTTTATCTTCttaa 1161 0.3256 MDMTSRNIDADSQTPSSKQQPNNNITPTTTLKSSPFTNGTHKRHYTTTTTTTTATPPPPPPHMSFCYKECLKNHAASLGGHALDGCGEFMPSIISNDPRSLKCAACGCHRNFHRRESQEHIITTTSTTTPTTTTTTTTNNNTYLSCIYTSTPSTTVPPPQPPPPLQLPHRGPISQSTSPSQSTSPSHSPSPISSPSSPPPLSHVPPSYHSSAPHMLLALGGNPYSTVTPSHSDHDQHQNHLQRNLNFASSVVKLENNNNNNNINNNTSSGKKRYRTKFSKEQKEKMHGFSEKLGWRMQKGDDGLVQKFCNDIGVSRGVFKVWMHNNKNNSLRKRSESNVGIGIGIATQGDNKNNDDNNDRSNNVIHMNEDGCVNVRVVSSVDGLSS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01938 386 MobiDBLite consensus disorder prediction 191 206 - -
Tsu08g01938 386 Gene3D - 255 331 - -
Tsu08g01938 386 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 271 328 IPR006455 -
Tsu08g01938 386 MobiDBLite consensus disorder prediction 1 52 - -
Tsu08g01938 386 MobiDBLite consensus disorder prediction 255 272 - -
Tsu08g01938 386 MobiDBLite consensus disorder prediction 154 169 - -
Tsu08g01938 386 MobiDBLite consensus disorder prediction 170 190 - -
Tsu08g01938 386 MobiDBLite consensus disorder prediction 347 366 - -
Tsu08g01938 386 MobiDBLite consensus disorder prediction 1 60 - -
Tsu08g01938 386 MobiDBLite consensus disorder prediction 255 274 - -
Tsu08g01938 386 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Tsu08g01938 386 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 67 116 IPR006456 -
Tsu08g01938 386 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 47 338 - -
Tsu08g01938 386 SUPERFAMILY Homeodomain-like 258 329 IPR009057 -
Tsu08g01938 386 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 338 - -
Tsu08g01938 386 MobiDBLite consensus disorder prediction 149 239 - -
Tsu08g01938 386 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01938 Tsu-Chr8 24774069 24775399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01938 63 331 ZF-HD Transcription Factor Family AT1G69600 40.293 7.58e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu08g01938 ZF-HD_dimer 7.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01938 - - mtr:MTR_8g467340 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01938 08 24774069 24775399 Tsu08g01938 08 24774069 24775399 ECH