Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01700 atgaCTGTCGAGACTCACCATCTCAACCTTTTTCCTTCTCAACTCCTACCCAACAACAGAGACATCAACATTCATCCCACCGACACAAGCTTCATGAATATGTACAATTACTCCTCACTAGTTCCACTTTCCGGCACCACCACCACCGTGTCGGAGAATATCATCCCTACGCAACCACCACCGTACAATCCTTTCATAAGTGATAACCTTCTGCATAAAATCTCCACAATGAAATCCGACAGCACCCTCACTTACAATAACAACAACGTTGTCTCGTTCCCACGAAAACGTTCTAGAGACTCAATCAATAACTACCCTTTGGTTTCTTACAAGAACCGTGGAAATTTCTCATTCCTCGGTGAAGATCTTTCTCAAAATATTCACCACCAAAATACCGACATGGACAACATCATTTCTCAACATaTGGAGAAAGTGAGAGTTGAAttagaagaaaagagaaaacgaCAAATGAGGATGTTAATGGAAGCAATGATGAAAAGATTAAaagcaaaagaagaagaaatagaaaagattgaaaTAATGAACATGATGCTTGAAGAGAGAGCAAAATCACTTTCCATGGAGAATCAAATATGGAGAGAAATAGCACAAAGTAAAGAAGCAACAGCCAATGCACTCCGGAACAATCTCGAACAAGTCCTAACACAGATGACAAACGATGGCGGGGAAGATTCCCCCGTCGCGCCGGAGGACGAGGAGTCATGTTGCGGAagtaatgataatgatgaagaTTTCGGATGGCGCACGGTAGTGGAATGTGCGCAGGATAAGGATGATAGAGAAGGTACAAGTGCTACTGGTTGCAGTGAAAAGAAGAGATTGTGCAGGAATTGTGGGAAAGGAGAATCGTGCGTACTGATTTTGCCTTGCAGACATCTCTGTCTATGTACTATGTGTGGGGCTACGGTTAATATTTGTCCTGTCTGTAAATCCTTCAAAAACGCTAGTTATCATGTTAACTTGAGTTAA 990 0.396 MTVETHHLNLFPSQLLPNNRDINIHPTDTSFMNMYNYSSLVPLSGTTTTVSENIIPTQPPPYNPFISDNLLHKISTMKSDSTLTYNNNNVVSFPRKRSRDSINNYPLVSYKNRGNFSFLGEDLSQNIHHQNTDMDNIISQHMEKVRVELEEKRKRQMRMLMEAMMKRLKAKEEEIEKIEIMNMMLEERAKSLSMENQIWREIAQSKEATANALRNNLEQVLTQMTNDGGEDSPVAPEDEESCCGSNDNDEDFGWRTVVECAQDKDDREGTSATGCSEKKRLCRNCGKGESCVLILPCRHLCLCTMCGATVNICPVCKSFKNASYHVNLS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01700 329 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 328 - -
Tsu08g01700 329 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 328 IPR017066 -
Tsu08g01700 329 PIRSF SBP1_RNase_bind 1 329 IPR017066 -
Tsu08g01700 329 Coils Coil 154 195 - -
Tsu08g01700 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 327 IPR013083 -
Tsu08g01700 329 Coils Coil 203 223 - -
Tsu08g01700 329 ProSiteProfiles Zinc finger RING-type profile. 282 317 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01700 Tsu-Chr8 20415642 20416978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01700 262 318 Miscellaneous Gene Families AT4G39050 29.825 1.25e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01700 08 20415642 20416978 Tsu08g01700 08 20415642 20416978 ECH
Tsu02g03908 02 45134213 45136125 Tsu08g01700 08 20415642 20416978 PCT