Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01694 ATGGCAAAACTAGTTCCCACTTTAGTTCATCCATTGAAATCGAAGTTTTTTGGTAATCATCACAGTTTTTTAACCAAACACTCTTTTCAACTTTATGGGTTTCAATCAAAGCAttcatattcttcttcttcatctaaGATAAGTATGAGTCTCAAAGCTGGCATTGTTGGCCTCCCTAATGTTGGCAAGTCTACCCTTTTCAATGCCGttGTTGAAAACGGAAAGGCTCAAGCTgctaattttcctttttgtacGATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTCCAAGTACTCTCCGATCTCAGTAAATCTCAACGAGTGGTTCCAGCATCCATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGGCTCGGTAATAAGTTTTTATCGCATATTCGTGAGGTGGACTCCATACTTCAGGTTGTACGGTGTTTTGACGACAATGACATTATTCATGTGAACGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAACTTGGAGCTTGTTTTCGCAGATTTAGATCAGATTGAGAAAAGATTggataaactaaaaaaaagcaAGACAAAGGACTCACAATCTAAAGTCAAGGAAGAGGCAGAAAAGTCTGCATTGGAAAAAATCCGTGTAGCACTCTTAGACGGAAAACCTGCACGATCTGTGACCTTAACAGATTTTGAAAGGGATTCTATAAAGCAACTTTGCTTGCTCACCATGAAACCCATTATATATGTGGCAAATGTTGCGGAATCTGATCTAGCCGATGCTGCAAACAATGATTATGTCGCAGGCGTTAAGAATGTTGCATCTGAGTTGCAGTCTGGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAACTTACTGAACTAGCAACCGAAGAAAGGCAAGAATATTTGAAATCTCTTGGTGTTGATGAAAGTGGTCTTGGGAATCTCATTAGAGCAACCTATGATCTTTTAGGGCTGCGAACTTATTTCACTTCTGGTGAGAAGGAGACAAAAGCTTGGACAATACTTGCAGGTATGACTGCGCCTCAAGCTGCTGGAGTTATTCACTCTGATTTTGAGAAGGGTTTCATTCGAGCAGAGACAgtgGCTTATGATGACTTTGTTGCTGCTGGTTCACTTGGTGCAGCACGAGAAAAAGGACTTGTAAGTTTCTTATTTCACTTCCCTCCCTAA 1218 0.3924 MAKLVPTLVHPLKSKFFGNHHSFLTKHSFQLYGFQSKHSYSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSDLSKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVDPKSDIDVINLELVFADLDQIEKRLDKLKKSKTKDSQSKVKEEAEKSALEKIRVALLDGKPARSVTLTDFERDSIKQLCLLTMKPIIYVANVAESDLADAANNDYVAGVKNVASELQSGIVTISAQVEAELTELATEERQEYLKSLGVDESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLGAAREKGLVSFLFHFPP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01694 405 PRINTS GTP1/OBG GTP-binding protein family signature 119 134 IPR006073 GO:0005525
Tsu08g01694 405 PRINTS GTP1/OBG GTP-binding protein family signature 75 93 IPR006073 GO:0005525
Tsu08g01694 405 PRINTS GTP1/OBG GTP-binding protein family signature 136 154 IPR006073 GO:0005525
Tsu08g01694 405 PRINTS GTP1/OBG GTP-binding protein family signature 53 73 IPR006073 GO:0005525
Tsu08g01694 405 CDD YchF 53 332 IPR041706 -
Tsu08g01694 405 Pfam 50S ribosome-binding GTPase 53 165 IPR006073 GO:0005525
Tsu08g01694 405 Gene3D - 51 333 IPR027417 -
Tsu08g01694 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 356 IPR027417 -
Tsu08g01694 405 Pfam Protein of unknown function (DUF933) 334 397 IPR013029 -
Tsu08g01694 405 Coils Coil 179 206 - -
Tsu08g01694 405 TIGRFAM TIGR00092: GTP-binding protein YchF 49 397 IPR004396 GO:0005524|GO:0005525|GO:0016887
Tsu08g01694 405 PANTHER OBG-LIKE ATPASE 1 49 399 - -
Tsu08g01694 405 Gene3D - 162 252 IPR023192 -
Tsu08g01694 405 Gene3D - 97 397 IPR012675 -
Tsu08g01694 405 PANTHER OBG GTPASE FAMILY 49 399 - -
Tsu08g01694 405 PIRSF EngD 48 399 IPR004396 GO:0005524|GO:0005525|GO:0016887
Tsu08g01694 405 Hamap Ribosome-binding ATPase YchF [ychF]. 50 403 IPR004396 GO:0005524|GO:0005525|GO:0016887
Tsu08g01694 405 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 51 333 IPR031167 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01694 Tsu-Chr8 20339913 20347873 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01694 08 20339913 20347873 Tsu08g01694 08 20339913 20347873 ECH