Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01684 ATGATTAGCTATAAACTAGAGAAACAAATTGTGTTCATCATGTACTTATCATCATGCTTGTGGTGGTGGAGTACTACTACTACAATTCATGTAAAAGCACAAACTAGTTTGATGCCAGGTGATACTATGGATTACGACCACGCTCTACTTTCCGAACAAGGCGAGTGTTTTCTATATTTTGCCTATTTTAATGGCTATGAAAAGGGCAAATACTTGAATATAATTTGTGGTCCTGATGTTAATAATAATGAAGTGTGGATGTATGATAGAAATAATCCAATTAACTCAGATTCACCAGTTCTATCACTAGACAACTTTGGTGTACTCAAAGTTGAAACCAATACTAGGAAACCAAAAATCATTTACTCTTCGCCGCAACCAATTAACAACACTGTGGCCACTATATTAGACACAGGTAACTTTGTACTTGAACAAATTCACCCCAATGGAACAAAGAGTTTGTTGTGGCAGAGTTTTGATTATCCGGTAGACACTTTGATGCCGACAATGAAATTAGGTGTTAACCGAAAAACAGGACATAATTGGTCACTAGTTTCGGCGTTAACGAATTCGGTCAGAACATCAGGTAAATTTAGTCTTGAATGGGAACCAAAACAAGGTGAATTGAACATTAAGAAACACGGCAAAGTGTATTGGAAAAGCGGAAAACTTGGAAGCAATGGATTATTTGAGAACATTCCGGCTAATGTTCAACAAATGTATAAGTACATTATTGTTTCTAACAAGGATGAAGACTCCTTCGCTTTCGAAATTAAAGAAcggaattataaaaaatttacaggATGGATACTATTTCCGGCGGGGAGGTTATCGAGTAGTGAAGGAGATATTGGAAATGCAGATATGTGTTATGGATATAATAGTGATGGAGGGTGTCAAAAATGGGAGGATATACCAACTTGTAGGGATCAAGGTGAGGTGTTTCAAAAACAAAGTGGTTCTCCAGGTTTTGACAATGAAACATCTGTATATAACGCTCTTTATGGTTACAATGATTGCAAGGAAAGTTGTTGGAAAAACTGTAATTGCAATGGATTTAGTAATTATTATGAAAATGGGACTGGATGTATATTCTATTCATCCAATTCAACTATAGATGTTAattttggtgatgatgatgataactTTCATTTCTTGGTAAAGCCAATAAAGGTAGCGCGCCATGGTAAAAAAAGGTGGATATGGATAAGTTCAGTAATAGCAGCTGCTTTACTCATAATAATATGCTCATTCATCATATGCctagaaaaaaagaaacaaaaatatgggCTTAAAGATAAGAAAAGTATAAGAAAGGAATCTGAGATGCAAGATTTGGCAGCTGCTAATAAATCCTATGATATCAATGATCTTGAGGATGAATTCAAGGGTCATGATATAAAAGTTTTTACCTATACATTAATTATGGAAGCAACTCTGGATTTTTCCCCTGAAAACAAGTTAGGACAAGGAGGCTATGGACCAGTTTATAAGGGAATCTTGCCAACAGGGCAAGAAGTTGCAGTAAAAAGACTTTCAAAAACTTCAGGACAAGGAATTGTGGAGTTCAAAAATGAATTGGTACTGATATGTGAACTTCAACACACAAATCTTGTACAACTACTTGGTTGTTGCATTCATGAAGAAGAAAGGATTCTAATTTATGAATATATGCCAAACAAAAGTTTGGATTTCTATCTATTTGATTCAACAAAGAGGAAGTTCCTAGATTGGAAGAAACGCTTCAACATAATAGAAGGAATTTCTCAAGGATTACTCTATCTTCACAAGTACTCAAGACTTAAAATCATTCATAGAGACTTGAAAGCTAGCAACATACTTCTTGATGAGAATATGAACCCAAAAATATCTGATTTTGGTATGGCAAGAATGTTCACACAGCAGGAATCCACAGTAAATACTAACAGGATTGTTGGGACATATGGATACATGTCTCCGGAGTATGCCATGGAAGGAATTTGTTCAACAAAGTCTGATGTCTATAGCTTTGGAGTGTTACTACTTGAAATTGTTTGTGGAAGGAAAAACAATAGCTTCTATGATGTTGATCGTCCACTAAATCTCATAGGACATGCATGGGAGCTATGGAATGATGGTGAGTATCTACAATTGATGGATCCATCATTAAGTGACACATTTGTTCATGATGAAGTGCAAAGGTGCATTCATGTTGGTCTCTTATGTGTAGAGCAATATGCAAATGATCGACCTACAATGTCTGATGTTACATCAATGTTAGCAAACAAATATGAACTCACAACCTTACCAAGAAGACCTGCATTTTATGTTAGAAGAGAGATCTATGAGGGAGAAACAACTTCTAAAGTGCTAGACACTTGCACTTACTCTATGACAACAATTTCTACCTCATGTGAAGTAGATGTGAACATATAA 2415 0.3462 MISYKLEKQIVFIMYLSSCLWWWSTTTTIHVKAQTSLMPGDTMDYDHALLSEQGECFLYFAYFNGYEKGKYLNIICGPDVNNNEVWMYDRNNPINSDSPVLSLDNFGVLKVETNTRKPKIIYSSPQPINNTVATILDTGNFVLEQIHPNGTKSLLWQSFDYPVDTLMPTMKLGVNRKTGHNWSLVSALTNSVRTSGKFSLEWEPKQGELNIKKHGKVYWKSGKLGSNGLFENIPANVQQMYKYIIVSNKDEDSFAFEIKERNYKKFTGWILFPAGRLSSSEGDIGNADMCYGYNSDGGCQKWEDIPTCRDQGEVFQKQSGSPGFDNETSVYNALYGYNDCKESCWKNCNCNGFSNYYENGTGCIFYSSNSTIDVNFGDDDDNFHFLVKPIKVARHGKKRWIWISSVIAAALLIIICSFIICLEKKKQKYGLKDKKSIRKESEMQDLAAANKSYDINDLEDEFKGHDIKVFTYTLIMEATLDFSPENKLGQGGYGPVYKGILPTGQEVAVKRLSKTSGQGIVEFKNELVLICELQHTNLVQLLGCCIHEEERILIYEYMPNKSLDFYLFDSTKRKFLDWKKRFNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESTVNTNRIVGTYGYMSPEYAMEGICSTKSDVYSFGVLLLEIVCGRKNNSFYDVDRPLNLIGHAWELWNDGEYLQLMDPSLSDTFVHDEVQRCIHVGLLCVEQYANDRPTMSDVTSMLANKYELTTLPRRPAFYVRREIYEGETTSKVLDTCTYSMTTISTSCEVDVNI 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01684 804 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 790 - -
Tsu08g01684 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 186 IPR036426 -
Tsu08g01684 804 ProSiteProfiles PAN/Apple domain profile. 308 387 IPR003609 -
Tsu08g01684 804 Gene3D Phosphorylase Kinase; domain 1 439 557 - -
Tsu08g01684 804 ProSiteProfiles Protein kinase domain profile. 482 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01684 804 Pfam Protein tyrosine and serine/threonine kinase 485 752 IPR001245 GO:0004672|GO:0006468
Tsu08g01684 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Tsu08g01684 804 PIRSF SRK 285 800 IPR024171 GO:0004674
Tsu08g01684 804 PIRSF SRK 6 281 IPR024171 GO:0004674
Tsu08g01684 804 Pfam PAN-like domain 323 368 IPR003609 -
Tsu08g01684 804 CDD STKc_IRAK 488 753 - -
Tsu08g01684 804 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 14 790 - -
Tsu08g01684 804 SUPERFAMILY Protein kinase-like (PK-like) 467 774 IPR011009 -
Tsu08g01684 804 ProSiteProfiles Bulb-type lectin domain profile. 34 156 IPR001480 -
Tsu08g01684 804 Pfam D-mannose binding lectin 85 186 IPR001480 -
Tsu08g01684 804 Gene3D Transferase(Phosphotransferase) domain 1 558 762 - -
Tsu08g01684 804 SMART serkin_6 482 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01684 Tsu-Chr8 20130687 20136303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01684 386 776 Receptor kinase-like Gene Family AT3G45860 49.118 3.59e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01684 PK_Tyr_Ser-Thr 1.2e-47 CL0016