Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01683 ATGGTTTACAATGAAAAAGGGAAACCTCAAGTTTTGCTTCTTATCTTGTGTGTCTGGTGGAATACTACTAGTATCCATGTGAAAGCAGTAAAGGATAGTTTGATGCCAGGTGATACACTGAATGCGACATCGACGTTGTGTTCTATACAAGGTACATATTGCATGAATTTTGACCAAACTCCTTATCTCAGCATATTTTCCAATGCAAGTTGGGTAGTGTGGATAGCTAACAGAAAACAACCTGTTGACGGTAATTCAGCAGTTCTATCATTAGACTACTCTGGTAAACCAATAATCCTTTACAATTCAACTAAACCTTTTAGCAATAGTACTATTGTTGCCACCTTGTTGGATACAGGTAACTTTATGTTGCAAGATATTCAAATGAAGACTGTGTTGTGGCAAAGTTTTGATCATCCAACTGATAGTTTGCTCCCTGGGATGAAATTAGGTGTGAATCATAAGACTGGTGAAAAGTGGTCACTGGTTTCAAGAATTAGTGATTCAATCCTAGCTCCTGGTCTATTCAGGCTTGAGTGGGAAcccaaaagaaaagaattgGTCATTAAGCGTAGAGAAAAGGTTTTTTGGACAAGCGGAGAACTGATGAAAAACGGTTCATTTGAGTATATATCTGGTGAAGATTTCAAGTACACAATTGTGTCAAATAAGAATGAAGAGTACTTCACATACAAAACTCCAAATGATAACCTTACTGTATGGACTCTATTAGAAACGGGTCAACTGATAAACAAGGAAGGAGATGACGTAGCAAGGGCTGATTTGTGTTATGGACATAACACTAATGAAGGGTGTCAAAAGTGGGATGAAGCAGAGATACCAATTTGCAGGAATCCTGGTGATAAGTTTGAAAGCAAGCAAGTTTACGGTAATGAAAATACGGTACATGATATAACAAATGCTAGTTATAGCATAAGTGATTGCCAAGCTATTTGCTGGACTAACTGCAGCTGCTTGGGATTCAAAACCTTCTATGATAATGGAACTGGTTGTGTCATCTTGTTATCAACTAAAGGTCTTAACATTGCAAGCAGTGGTTATTACTCATTTTTAATTCTAATTAAGAACACTGATCACAAAGGTATGTATAAGTGGATATGGATTTGCGTTGGAATGGGAACTGTTCTACTCATTATTGGCCTTTCCATTCTGTTCCGAGCCTTAAGAAAACGAAAATATGTGCTTCGAGAGAAGGAAAGAATGAAAATGCAGATTGAGATTCGAGATCTTGAAGGTTATAGGAGATACTCTGATGGCGATGATCTAGAGGGCGATTTAAGCAATGGAGATGACTTAAAAGTATTTAGCTATTTGACAATAATTGTGGCAACCAGTGGCTTTTCATTAGAAAACAAATTAGGACAGGGTGGCTTTGGACCTGTTTTTAAGGGAATTCTACCTTCAGGGCAAGAAGTAGCTGTgaagaaactttcaaaaacttCGGGACAGGGAATTACTGAATTTAGAAATGAATTAACACTCATTTGTAAGCTTCAGCATACAAATCTTGTTCAGTTGATCGGTCATTGCATTCATGAACAAGAACGGATGTTGATCTATGAGTATATGCCCAACAAAAGTTTggacttttttttatttgATGCCACAAGAAGAAAGTTGCTAGATTGGAACAAACGCTTTGGCATAATAGAAGGAATTGCTCAAGGATTACTATATCTTCACAAATACTCAAGACTCAGAATTATCCACAGAGATTTGAAGGCTAGTAATATTCTCCTTGATGAAAATATGAACCCCAAAATTTCTGATTTTGGTGTAGCAAGAATGTTCACAAAACAAGAAACCGAAGCAAATACCAATAGGATTGTTGGGACATATGGTTATATGTCTCCAGAGTATGCGATGGAAGGAGTTTTTTCTACAAAGTCGGATGTGTATAGTTTCGGAGTGTTGCTCCTTGAAATTATCAGTGGTGAAAAAAACAATAGCTTCTACAGTGAAGACAGACCACTCAATCTAGTAGGACATGCATGGGAGCTATGGAAAGAAGGTGTGGTTCTTCAATTGGTGGATCCATTACTAAATGAGTCGTTTTCTGAGGATGAGGTTTTAAGATGTGTCCATGCTGGTTTATTATGCGTAGAGGAAAATGCAGATGATCGCCCCACCATGTCCAGTGTTATATCAATGttaacaaacaaaatcaaacctgATGGTTTGCCCAAGAAACCAGCATACTATGGTAGAACAAGAGTCTTCGAGGAAGAAACATTTGCCGAAGAATTGGGTGTGGATTCCACATATGAAAACTCTCCTTCACACGTACAATCATTATAG 2319 0.367 MVYNEKGKPQVLLLILCVWWNTTSIHVKAVKDSLMPGDTLNATSTLCSIQGTYCMNFDQTPYLSIFSNASWVVWIANRKQPVDGNSAVLSLDYSGKPIILYNSTKPFSNSTIVATLLDTGNFMLQDIQMKTVLWQSFDHPTDSLLPGMKLGVNHKTGEKWSLVSRISDSILAPGLFRLEWEPKRKELVIKRREKVFWTSGELMKNGSFEYISGEDFKYTIVSNKNEEYFTYKTPNDNLTVWTLLETGQLINKEGDDVARADLCYGHNTNEGCQKWDEAEIPICRNPGDKFESKQVYGNENTVHDITNASYSISDCQAICWTNCSCLGFKTFYDNGTGCVILLSTKGLNIASSGYYSFLILIKNTDHKGMYKWIWICVGMGTVLLIIGLSILFRALRKRKYVLREKERMKMQIEIRDLEGYRRYSDGDDLEGDLSNGDDLKVFSYLTIIVATSGFSLENKLGQGGFGPVFKGILPSGQEVAVKKLSKTSGQGITEFRNELTLICKLQHTNLVQLIGHCIHEQERMLIYEYMPNKSLDFFLFDATRRKLLDWNKRFGIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGVARMFTKQETEANTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIISGEKNNSFYSEDRPLNLVGHAWELWKEGVVLQLVDPLLNESFSEDEVLRCVHAGLLCVEENADDRPTMSSVISMLTNKIKPDGLPKKPAYYGRTRVFEEETFAEELGVDSTYENSPSHVQSL 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01683 772 CDD STKc_IRAK 460 727 - -
Tsu08g01683 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Tsu08g01683 772 SMART serkin_6 454 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01683 772 ProSiteProfiles Protein kinase domain profile. 454 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01683 772 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 160 IPR036426 -
Tsu08g01683 772 Pfam Protein tyrosine and serine/threonine kinase 455 723 IPR001245 GO:0004672|GO:0006468
Tsu08g01683 772 SMART blect_4 37 140 IPR001480 -
Tsu08g01683 772 Gene3D - 25 138 IPR036426 -
Tsu08g01683 772 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 10 770 - -
Tsu08g01683 772 PIRSF SRK 258 771 IPR024171 GO:0004674
Tsu08g01683 772 PIRSF SRK 8 274 IPR024171 GO:0004674
Tsu08g01683 772 ProSiteProfiles Bulb-type lectin domain profile. 31 137 IPR001480 -
Tsu08g01683 772 Pfam D-mannose binding lectin 72 165 IPR001480 -
Tsu08g01683 772 Gene3D Phosphorylase Kinase; domain 1 426 529 - -
Tsu08g01683 772 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 770 - -
Tsu08g01683 772 SUPERFAMILY Protein kinase-like (PK-like) 438 742 IPR011009 -
Tsu08g01683 772 Gene3D Transferase(Phosphotransferase) domain 1 530 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01683 Tsu-Chr8 20111662 20128718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01683 432 761 Receptor kinase-like Gene Family AT3G45860 55.422 1.20e-124 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01683 PK_Tyr_Ser-Thr 1.5e-49 CL0016