Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01675 ATGTCAGTGCTAATTGTCACCAGTTTAGGGGACCTTGTAATCGATTTACAAACCCAAAAATGTCCATTAACCTGCAAAAACTTCTTGAAGCTTTGCAAGATTAAATACTATAATGGTTGTTTATTTCACACCGTTCAAAAGAATTTCACTGCTCAAACCGGTGATCCAACTGGAACTGGCAATGCTGGTGATTCTATCTACAAgTTTCTTTATGGTGATCAAGCTCGGTTTTTCAATGATGAGATTCATATTGATCTAAAGCACTCTAAGACTGGAACTGTTGCCATGGCAAGTGCGGGAGAGAATATGAATGCTTCACAGTTCTATATAACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTAAGACTCTGACTAGAATAAATGAGGCTTATGCGGATGGCAAGGGCAGACCATTTAAAAATATCCGAATCAAGCACACTTACATCCTGGAGGATCCTTATGATGATCCTCCTCAGCTACCTGAGTTCATTCCTGAAGCATCACCAGAAGGAAAACCTAAAGACGAGGTTGATGATGAAGTCCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGGAGaacttgaagaagttattagATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAGCCTCCAGATAATGTACTATTTGTCTGTAAATTGAATCCTGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTTATAGAGTTTGAGGACAAAGAGGCATGTGAGCAAGCATATTTTAAGATGGATAATGCATTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTTGCAAAACTGTGGTCACAATATATGCGAAAAGATAATAAGGgtggtggttgcttcaaatgtgGTTCCACAGATCATATTGCCAGGGATTGCACTGGAGATGCTACGATGAAACAATCCACAAAATACATCTTGAAGGATAATAATTCCCAACATGGTGGACATAATGCGAGATATGAAATGGTTTTTGATGGAGATAATACAGAAAGTCCAAGGCGTGAAACAAAACACCAAAGACATAACAGGGATGACCGAGATGATAAAATAAACACGAGGGAAAATATTAAAGACCATAGTCATAGAGGTCGTAGTGGTCAGGAGATGGCAGGCTCAAATAACAGAGATAGGTATGCCAACAGAAGCAGAGGGTTTGAAGGAAATGGAGATGATAAAGCACGGCTGGAAAGAGGTGCGAGAGGTTCGGATTCTTTTGCTGGCAAGAAAGACAGAGAAAGGCAAATGGGAAGACAGAGAGATGATGGCTACCGACAGAAAGATGAGCTAGACTCGAGGAAAAGAGACAGTGAAAGCTACACAGAAAGCCGGACTAGTCGAGATGATAGGAGAAAAACAGATGCTAACCATTTGGATAGGAAGAATGACAGAGATTATAGGAAGAGAACTGAAGACGGTGGCAGGGAAGATGTGAAGATTGATTCTGGACGAAGAAAACGAAGCCCAGATGTTGACGATTACAAACGTAGAAGGAATGATGAGGATTACAGAGAAGATTTAAAGATTGATTCCAGACGAAGAAAACAAAGCCCAAATGACGGGGACTACAAACGTGGAGGGGACCACGAGGATTACACACGTAGGAGGGAAGATCGTGGACATGATACTGATAGAAGACATCATGGTGACAAAAGATGA 1836 0.4031 MSVLIVTSLGDLVIDLQTQKCPLTCKNFLKLCKIKYYNGCLFHTVQKNFTAQTGDPTGTGNAGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENMNASQFYITLRDDLDYLDGKHTVFGEVAEGFKTLTRINEAYADGKGRPFKNIRIKHTYILEDPYDDPPQLPEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYMRKDNKGGGCFKCGSTDHIARDCTGDATMKQSTKYILKDNNSQHGGHNARYEMVFDGDNTESPRRETKHQRHNRDDRDDKINTRENIKDHSHRGRSGQEMAGSNNRDRYANRSRGFEGNGDDKARLERGARGSDSFAGKKDRERQMGRQRDDGYRQKDELDSRKRDSESYTESRTSRDDRRKTDANHLDRKNDRDYRKRTEDGGREDVKIDSGRRKRSPDVDDYKRRRNDEDYREDLKIDSRRRKQSPNDGDYKRGGDHEDYTRRREDRGHDTDRRHHGDKR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01675 611 Gene3D - 331 418 - -
Tsu08g01675 611 MobiDBLite consensus disorder prediction 386 425 - -
Tsu08g01675 611 ProSiteProfiles Zinc finger CCHC-type profile. 339 352 IPR001878 GO:0003676|GO:0008270
Tsu08g01675 611 MobiDBLite consensus disorder prediction 439 611 - -
Tsu08g01675 611 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Tsu08g01675 611 Gene3D - 1 172 IPR029000 -
Tsu08g01675 611 CDD cyclophilin_RRM 4 169 IPR035538 -
Tsu08g01675 611 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Tsu08g01675 611 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Tsu08g01675 611 MobiDBLite consensus disorder prediction 385 611 - -
Tsu08g01675 611 Pfam Zinc knuckle 338 353 IPR001878 GO:0003676|GO:0008270
Tsu08g01675 611 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Tsu08g01675 611 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Tsu08g01675 611 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Tsu08g01675 611 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Tsu08g01675 611 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 494 IPR035542 -
Tsu08g01675 611 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Tsu08g01675 611 Gene3D - 181 324 IPR012677 -
Tsu08g01675 611 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Tsu08g01675 611 SMART rrm1_1 244 317 IPR000504 GO:0003723
Tsu08g01675 611 CDD RRM_PPIL4 240 322 - -
Tsu08g01675 611 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Tsu08g01675 611 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01675 Tsu-Chr8 20012007 20023561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01675 7 166 U-box Gene Family AT5G67530 40.625 6.06e-30 122