Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01670 ATGGATCTCATTATTTCACACACTTCATACCCATTTCTTCTTTCCTCATCATCACCAACCCCAACTCTTCAAAATCCTAATTTTTTCACGTTAACCCCATCTTTCAGTAACCGCAGAAAGCTCAAACTTCGAGCTTCATCTACAGCAGACCCAAATGGCGGTGATGGTTCTTCTTGGTCACAGTCACTGGAACGTGCTTCGAAGCGATTTTTGGTGAAATTTGGTGATATGGTGAAGAAAGAAATTGGTGTTGATTTGGGAGATGGTGTTGTGAAGGCCGGTGAGTTTGTGGATGGTGTGAAGAAGAACGTTGGAAGTGAGTTTCAAACTCTTTCGCTGTCCGAGTTTGTTGAATGGAACCGGTTGGAACATTGGAAGAATCTCAAGAACTGGGATCCTAGGCGAATCGGTGCTTTAgttctttatatatttgttgtAGCATTTGCTTGTAGAGGAGTATATGTAGCAATTCAAGCACCTTTCATAAACCGCCAGAGGAAAGAGTTCACTGAAGCCTACATGGAAGCATTGATTCCTGAGCCATCCCCAACTAACATCAGAAGATTCAAGAAGGGTTTGTGGAGGAAGACAATGCCAAAAGGCCTGAAAATGAAAAAGTTTATTGAAAGACCTGATGGAACACTTGTTCATGATACCACGTATGTTGGAGAGGATGCATGGGAGGAGGATCAAGATACTTCTGAGGAACATGTTAAACAAATTATAGAGGATGATGAACAGTTAAACAGTGAAGAGAAGAAAGAACTAACCAAAAATCTGACCATTACAGCAGGCGAAGTTCAAACTGAGGGCACATGGCGTGAGAGACTTCATAAATGGAGGGAAATCCTTGGAAAAGAGCGTCTCGTTGAGCAATTAAATTCCTCAAATGTCAAATATGCAGTTGAGTTTGACATGAAAGAGGTTGAAAATAGTCTTCGCAAGGATGTAGCAGAAAAAGCGACAGCCACTCAGGGAACAAGGGGTCCGTGGATAGCTAAGAGATGGTGGCACTATCGTCCTAAACTTCCTTacaattattttcttaacaaaCTTGATAGTTCCGAGGTAGCAGCTGTTGTCTTTACGGAAGACATGAAAAGATTATACGTGATAATGAAAGAAGGTTTCCCATTGGAATATGTTGTTGATATTCCTCTTGATCCTTATCTATTTGAGATTATTACAAGTTCTGGAGTGGAAGTAGAGCTTCTTCAGAAGAAACAGATCCATTATTTTTTGAAGGTTGCGTTTGCATTTTTTCCTGGAATACTAATTATGTGGCTTATAAATCAGTCTCTGGTCCTTCTGCACATTACTTCCAGTCGTTTTCTTTACAAGAAGTATAATCAACTCTTTGATATGGTTTCTGCCGAAAATTTCATTCTGCCAGTTGGAGATGTTGGTGAAACAAAATCTATGTCAAAGGAAGTTGTGTTGGGAGGTGATGTTTGGGATCTGCTTGATGAGTTGATGATCTATATGAAAAATCCTATGCAGTTCTTTGATAGGGATGTGAAGTTTGTTCGGGGTGTTCTACTCTCTGGACCTCCAGGAACCGGAAAAACACTTTTTGCAAGGACACTTGCAAACCAAAGTGGATTGCCTTTTGTTTTTGCTTCTGGTGCTGAGTTTACAGATAGCGAAAAGAGTGGACCATCTAGGATTAATGAGATGTTTTCCCTTGCTAGGAGAAATGCaccttgttttgtttttgtggaTGAAATAGATGCTATTGCTGGAAGACATACTCGGAAGGATCCACGTAGAAGGGGAACTTTTGAAGCTCTTCTTTCACAGCTTGATGGAGAGAAGGAAAAAACTGGTTTTGACCGTGTATCCCTCAGACAAGCAGTCATATTTATCTGTGCCACAAATCGACCAGATGAATTAGATGTTGAATTTGTTCGACCTGGACGAATCGATCGTCGTCTATACATTGGTTTGCCTGATACAGAACAAAGAATCAAAATTTTTGGTGTGCATAGTTCTGGAATGCAACTTGCAGAGGATGTGAATTTCACGAAGCTTGTCTTCCGTACTGTTGGATTCTCTGGAGCAGATATAAGAAACCTTGTCAATGAAGCAGCAATTATGTCGGTGAGAAACGGGCATTCCAAAATTTTCCAGCAAGACATTGTCGATGTTCTAGATAAACAACTGCTTGAGGGTATGGGTGTCCTTATCACTGAGGACGAGCAAAAGAAGTCTGAAGAAAGAGtatcttttgaaaaaaagagACTGCTTGCTGTACATGAAGCCGGTCATATTGTGCTTGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCGCAGCTCCTTCCCGGTGGTAAGGAAACTTCAATATCTGTTTTCTACCCTCGAGAAGATATGGTAGACCAAGGTTATACAAATTTTGGTTACTTGAAGATGCAAATGGTAGTTGCTCATGGTGGTCGATGTGCTGAACATGTTATATTTGGTGATGATATTACTGATGGAGGAAGGGATGATCTAGAAAAGATAACAAAGATCGCCAGGGAGATGGTAATCAGCCCTCAAAATAGAAGGTTGGGGTTAATATCTTTAACAAAAAGGGCTGGTTTGACTGATCGAGCAGACGCTACAGATGGCCATTTAATAAGATATAGATGGGATGATCCTCAAGTAATTCCTACAAAGATGTCGGTAGAGTTATCCGAGCTCTTCACACGGGAGTTGACAAGGTTCATTGAAGAAACCGAAGAACTTGCGATGAATGCTTTGAGGGATAATAAGCACATCCTGGACTTGGTTGCAAGGGAACTATTGGAGAAGTCACGAATAACTGGATTGGAGgttgaagaaaaattgaaaacaatgtCTCCGGTAATGTTTGAGGACTTTATAAAGCCATTCCAAATAAACTTCGAAGAGGACGGACCATTGCCGCATAATGATCGTGTACGGTATCGGGATCCTGACTTATACCCTGCTCCTCTCCATAGAGGTTAA 2976 0.4005 MDLIISHTSYPFLLSSSSPTPTLQNPNFFTLTPSFSNRRKLKLRASSTADPNGGDGSSWSQSLERASKRFLVKFGDMVKKEIGVDLGDGVVKAGEFVDGVKKNVGSEFQTLSLSEFVEWNRLEHWKNLKNWDPRRIGALVLYIFVVAFACRGVYVAIQAPFINRQRKEFTEAYMEALIPEPSPTNIRRFKKGLWRKTMPKGLKMKKFIERPDGTLVHDTTYVGEDAWEEDQDTSEEHVKQIIEDDEQLNSEEKKELTKNLTITAGEVQTEGTWRERLHKWREILGKERLVEQLNSSNVKYAVEFDMKEVENSLRKDVAEKATATQGTRGPWIAKRWWHYRPKLPYNYFLNKLDSSEVAAVVFTEDMKRLYVIMKEGFPLEYVVDIPLDPYLFEIITSSGVEVELLQKKQIHYFLKVAFAFFPGILIMWLINQSLVLLHITSSRFLYKKYNQLFDMVSAENFILPVGDVGETKSMSKEVVLGGDVWDLLDELMIYMKNPMQFFDRDVKFVRGVLLSGPPGTGKTLFARTLANQSGLPFVFASGAEFTDSEKSGPSRINEMFSLARRNAPCFVFVDEIDAIAGRHTRKDPRRRGTFEALLSQLDGEKEKTGFDRVSLRQAVIFICATNRPDELDVEFVRPGRIDRRLYIGLPDTEQRIKIFGVHSSGMQLAEDVNFTKLVFRTVGFSGADIRNLVNEAAIMSVRNGHSKIFQQDIVDVLDKQLLEGMGVLITEDEQKKSEERVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETSISVFYPREDMVDQGYTNFGYLKMQMVVAHGGRCAEHVIFGDDITDGGRDDLEKITKIAREMVISPQNRRLGLISLTKRAGLTDRADATDGHLIRYRWDDPQVIPTKMSVELSELFTRELTRFIEETEELAMNALRDNKHILDLVARELLEKSRITGLEVEEKLKTMSPVMFEDFIKPFQINFEEDGPLPHNDRVRYRDPDLYPAPLHRG 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01670 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 719 IPR027417 -
Tsu08g01670 991 Pfam Peptidase family M41 741 942 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu08g01670 991 Gene3D - 469 650 IPR027417 -
Tsu08g01670 991 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 33 990 - -
Tsu08g01670 991 Pfam AAA+ lid domain 671 711 IPR041569 -
Tsu08g01670 991 Gene3D Peptidase M41 734 949 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu08g01670 991 SMART AAA_5 508 651 IPR003593 -
Tsu08g01670 991 Pfam ATPase family associated with various cellular activities (AAA) 512 648 IPR003959 GO:0005524|GO:0016887
Tsu08g01670 991 Gene3D - 651 725 - -
Tsu08g01670 991 PANTHER ATP-DEPENDENT PROTEASE 33 990 - -
Tsu08g01670 991 CDD AAA 510 649 - -
Tsu08g01670 991 SUPERFAMILY FtsH protease domain-like 743 955 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01670 Tsu-Chr8 19970695 19983660 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01670 08 19970695 19983660 Tsu08g01670 08 19970695 19983660 ECH