Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01660 ATGACagcaaacaagaaaaagaaagccAACCAAAACCCAGAGAACAAGTTCCAATTCGAGCTCAATTCATGTTCCAAATCAAAGGACTTCCGTGGTGCGATTTCTCTATACGACGATGCCGTTTCAAATAAAACTCGTCTCAACCAACACCACCTCAATGCACTCCTCTACCTCTGTTCCAATGCCGTCACAAACCCTTCCCTCAAACAACTCGCCTTAGATTACGGCTTTCGCATATTCAACCACATGTCATCCCTAAATATCACTCCTAATGAAGCCACTGTTGCCACTGTAGCTAGACTTGCCGCCGCTAACGGTGATGGTGACCGTGCATTTGAATTGGTAAAAGACATTGGTAAGTACAATGTTGCCCCTAGGTTAAGGACTTATGATCCCGCATTGTTCTGCTTTTGTGAATTTCTTGATGCTGATAAAGCCTATGAGGTTGAGGAGCATATGAATAGTGTTGAGGTTAGTTTGGAGGAAGCAGAAATTGCGGCGCTTTTAAATGTTAGTGCGAAGAAGGGTAGAGCTGATAGGGTTTATAGGTATCTTCACAAGTTAAGGAGCGGTGTGAGGTGTGTAGGGGAATCGACGGCGGCAATTATTGAGGAGTGGTTTCAGAGCAGTGAGGCGCGTGAGGTTGGTGAGGGGGATTTGGATGCAAGGAGGGTCAGAGAGGGGGTTTTGAGGAATGGAGGAGGATGGCATGGTTTGGGATGGGTTGGAAAAGGGGATTGGCTTGTATCTAGAACAAGTGTTGATGGTGATGGGATTTGTTGTGGATGTGGTGAGCAATTGGTTTGTGTGGATATCGATGACGAGGAGATGGAGAAATTTTCTTTGTCTATTGCTGCATTGGCCGTGGAGCGTGAGGTCAAGGCAAATTTTAGTGAATTTCAGGGCTGGCTTGAGAAACATGACTCTTATGAAGCCATAGTGGATGGTGCAAATATTGGGCTCTACCAGCAAAATTTTGCTGATGGAGGATTTAGTATTAATCAGCTTGATAATGTTGTGAAAGAATTGTACAATCGAAATGGGAAAAAATGGCCGCTGGTTATCCTACACAACAAGCGTGTGAGAGGGCTGATGGAAAATCCTTCCAGCAGAATATTGGTAGAGGAGTGGATGAAAAATGGTGTACTATATACAACTCCAAATGGATCCAATGATGATTGGTATTGGCTGTATGCTGCCATAAAACTCAGGTGCTTGCTTGTGACAAATGATGAGATGCGAGATCACATATTTGAACTCATAGGAAGCAACTTTTTCAATCAGTGGAAAGAAAGACATCAAGCACACTACACTTTTGTTAAGGGGAACTTGAAACTTCAGATGCCACCATCATATTCATTGGTTATCCAGGAATCAGAAAAAGGATCATGGCATGTGCCTTTGGCCCTGGGCACTAGCACTAGCAACGAGTCTTCGAGACCTTGGATCTGCATCACGCGGAAAAGTGCGGATGATGATGTTGCTACTGTTTCAAACGGTGTGGATACTTCTGGAAATGGTGATCTCGACCAGCCACAGAAATTAGCAGACAATGTTCGTAACTTAGATTCCCAAGTCATTGATAGTAACAGTACTTCCATTACTggtaaaagaaaagagagatcTGAGCCTTCATGA 1638 0.4292 MTANKKKKANQNPENKFQFELNSCSKSKDFRGAISLYDDAVSNKTRLNQHHLNALLYLCSNAVTNPSLKQLALDYGFRIFNHMSSLNITPNEATVATVARLAAANGDGDRAFELVKDIGKYNVAPRLRTYDPALFCFCEFLDADKAYEVEEHMNSVEVSLEEAEIAALLNVSAKKGRADRVYRYLHKLRSGVRCVGESTAAIIEEWFQSSEAREVGEGDLDARRVREGVLRNGGGWHGLGWVGKGDWLVSRTSVDGDGICCGCGEQLVCVDIDDEEMEKFSLSIAALAVEREVKANFSEFQGWLEKHDSYEAIVDGANIGLYQQNFADGGFSINQLDNVVKELYNRNGKKWPLVILHNKRVRGLMENPSSRILVEEWMKNGVLYTTPNGSNDDWYWLYAAIKLRCLLVTNDEMRDHIFELIGSNFFNQWKERHQAHYTFVKGNLKLQMPPSYSLVIQESEKGSWHVPLALGTSTSNESSRPWICITRKSADDDVATVSNGVDTSGNGDLDQPQKLADNVRNLDSQVIDSNSTSITGKRKERSEPS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01660 545 Gene3D Tetratricopeptide repeat domain 13 485 IPR011990 GO:0005515
Tsu08g01660 545 MobiDBLite consensus disorder prediction 518 545 - -
Tsu08g01660 545 PANTHER UNCHARACTERIZED 3 490 - -
Tsu08g01660 545 MobiDBLite consensus disorder prediction 518 533 - -
Tsu08g01660 545 PANTHER PROTEINACEOUS RNASE P 3 3 490 - -
Tsu08g01660 545 Pfam Protein-only RNase P 255 484 IPR031595 -
Tsu08g01660 545 Gene3D - 272 448 - -
Tsu08g01660 545 Pfam Pentacotripeptide-repeat region of PRORP 5 214 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01660 Tsu-Chr8 19844888 19850727 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01660 08 19844888 19850727 Tsu08g01660 08 19844888 19850727 ECH