Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01644 ATGGAAAGAATGTTCCCTGCAAAAAAGCCCTCAACAATGATGAATTCTCATGATAGATCCATGTGTGTTCAAGGTGATTCAGGCCTTGTCCTCACCACCGATCCAAAACCACGGCTTCGATGGACAGTCGAACTCCATGAACGCTTTGTCGATGCTGTTGCTCAACTTGGAGGGCCTGATAAAGCTACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGACTTGGAAAGCAACCCCACAAGGAATTCAATGAGCAATCTATTAAGGATGGTATGAGAGTTTCGGCTTTTGAACTGCAGCGAAATACTGGCAATTCTTCTTCTATGACTGGCCGCAACATGAATGAGATGCAAATGGAGGTGCATAGAAGGTTGCATGAACAACTAGAGGTTCAAAAGCACCTTCAATTGAGGATTGAGGCTCAAGGAAAATACATGCAAAACATATTAGAGAAAGCATATCACACACTTGCAGGAGAAAACATGGCAGCTGCAGCTACAAATTTCAAGGGTATTGGAACTCAAGGAATCCCTAACATGAAAGATTTTGTTTCTCCTCATAATAATTTTCCTCATTTTCAAGACCTTAACATTTGTGGTAGTGATGATGAACAACAACTTGAGAGGCCAACCATTGATGGATTTATGCCAAATATTAGTaatgaaaatttgtttgttgaaaagaaaagaactaataaCCCTTTTAATGGAAGTGGAAAAGGTCCATTAATTTGGAATGATAATAATGATCTTAGGCTTCATGATTTGGGAACAACTTCATCATGCATTAGTCCTCAAGATGTTCCTAATTTCAAAGGTGATGATTCATTGGATAGAGGTGATATTCAAAGTGATCCTATTGTTGAGATTTATGATACAAAGTTAAGtgaaaagaaatttgatgcatCTATGAAACTTGGAATAACAACACCTATGATCAATGCTGTGGCAGCTGGTAGAAGCTCATCAACATTTGGTTGA 1026 0.3752 MERMFPAKKPSTMMNSHDRSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDGMRVSAFELQRNTGNSSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQNILEKAYHTLAGENMAAAATNFKGIGTQGIPNMKDFVSPHNNFPHFQDLNICGSDDEQQLERPTIDGFMPNISNENLFVEKKRTNNPFNGSGKGPLIWNDNNDLRLHDLGTTSSCISPQDVPNFKGDDSLDRGDIQSDPIVEIYDTKLSEKKFDASMKLGITTPMINAVAAGRSSSTFG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01644 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 278 IPR044848 GO:0003700
Tsu08g01644 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Tsu08g01644 341 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g01644 341 Gene3D - 35 93 - -
Tsu08g01644 341 Pfam MYB-CC type transfactor, LHEQLE motif 132 170 IPR025756 -
Tsu08g01644 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 278 - -
Tsu08g01644 341 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
Tsu08g01644 341 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Tsu08g01644 341 Pfam Myb-like DNA-binding domain 39 87 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01644 Tsu-Chr8 19612420 19615203 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu08g01644 Myb_DNA-binding 4.5e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01644 08 19612420 19615203 Tsu08g01644 08 19612420 19615203 ECH
Tsu02g03746 02 42385374 42387071 Tsu08g01644 08 19612420 19615203 PCT