Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01634 ATGAATAACTCAGGAAATATATCATTGTCTGAATCTGCTATTGCAAACAATCAAGATTCTCAACCAAACACATCTTCAACCCAACACAGTAATTCCcctctactattccttgaagaacaTTTAGGAGGTGAAATATCTCATCAACATGTAACCAAAAATCTTGTTCAGAACACACTTTCAATCTCTGAGCAAACTCATAACCCCACTTCTAACACTACTCAAACTAGTCCTGAAGACAACCTTACTCTAAGACAAGTTGTATCAGGACCTGTTCATCCAAACCCATCCATACAAGTAAAAATCCAACCTGAGCCAcatatctcacctgaacataTTTATTCACATCCTACACCTCAAACAACCCCTGAACACCAAATCAGCTCATATACTAAAGTGATTGCTACTGATTCTCATAACTCAAAAGAATGTCATGTGAAGCACTGGACATGTTGGCATAGAAACGAATGTGTTGAGGTAATGTCTAAAGAAGATCATGAGGAATCATCTTTTCATGGAGCCCAATGCTTTCTCTTGGAGCCAAGAAATGAAACCTCCGATTACTCATTCAATGATGATGATAAGCAAAAAACATATGAAGGAGATGTTTACTATATTGAAGGAGGGGAAGATAGTGATGAGTCAATTAAAGAAACAACAAGAGGGCTAATTCAGCATAATGGCATTGTTAGTAATTACAATGATAGCTGTGCAGTTTGTGGTAATCCATGCTCCAAAAAATGCTCAAGATGCAAAGCTATAAAATACTGCTCACAAACATGTCAACATTATGATTGGAAATCCGGGCATAAATTTCAATGTTGTGTTAAGATGAAAAGTTCAACTCAAGTAGCAACAAGCAACCAAGAATGGCCTGCTGGTGaaattGTTATAGTGCCTCCAAATCTAGATGAAGTGGCAGATACTTATCATTCATATGATCCTCTTTGCTTGGAATTTCATTCAGAAGAAAACAGCAAGGCTCTGATTTTAAGTTCTCAGGAAGCTAACAACAAAGTAGAAGAggttgaagaaaaaattagaaacctaaaaaaagaatttgaaatgcTCAGAAATGAAAATATAACACTGCAATCAAAGCTTGAGTATTTGGAAATTAGCGCAAAGTATTCTGCTGATAGACTTTACAGTTTCAAGAAAGAAAATCAGCACCAGTTGTTTATATTGAAGCATGAAAATGAGTTGATATCAAATGCTGAGAAACAAGCGCGTCAAATGGTTACTAATTTATCTCAGAGGATACATCGTTTGCAGATTTCAATTGAAACTGGAGTAGAAGAGAGgaaaaaacaagaagaatttATCCATATGCTGCAGAATGAATGTACAAAGGCTAAGAGAGAGTTTcaagaacaaaacaaatatgTTGTAAGGCTTAGACAGAAGCTTGATGATGCAACTCAATTTCCTATCAGAATAGGCGAAGAGACAAGACAAAAGTTAGCAATTACTTCCAATGCAATTTTGGCTAATGAATTCAAGCCTGCTGTTGAGGTGTCCAAGACAATCAGTTTAAGCAGAAATCCAACCTTGACTAGTCAGTGTTGTACAATCTGCTTAAGCAATGAGAAGGACTTGGCCTTTGGTTGTGGGCACATGACTTGCAGAGAGTGCGGATCGAAAATTCACAAGTGCCATATATGTCGAAAGAAGATCGTTAATCGTATCAGGTTGTTCCCTGGCTGA 1704 0.3474 MNNSGNISLSESAIANNQDSQPNTSSTQHSNSPLLFLEEHLGGEISHQHVTKNLVQNTLSISEQTHNPTSNTTQTSPEDNLTLRQVVSGPVHPNPSIQVKIQPEPHISPEHIYSHPTPQTTPEHQISSYTKVIATDSHNSKECHVKHWTCWHRNECVEVMSKEDHEESSFHGAQCFLLEPRNETSDYSFNDDDKQKTYEGDVYYIEGGEDSDESIKETTRGLIQHNGIVSNYNDSCAVCGNPCSKKCSRCKAIKYCSQTCQHYDWKSGHKFQCCVKMKSSTQVATSNQEWPAGEIVIVPPNLDEVADTYHSYDPLCLEFHSEENSKALILSSQEANNKVEEVEEKIRNLKKEFEMLRNENITLQSKLEYLEISAKYSADRLYSFKKENQHQLFILKHENELISNAEKQARQMVTNLSQRIHRLQISIETGVEERKKQEEFIHMLQNECTKAKREFQEQNKYVVRLRQKLDDATQFPIRIGEETRQKLAITSNAILANEFKPAVEVSKTISLSRNPTLTSQCCTICLSNEKDLAFGCGHMTCRECGSKIHKCHICRKKIVNRIRLFPG 567
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01634 567 Coils Coil 395 415 - -
Tsu08g01634 567 Coils Coil 325 366 - -
Tsu08g01634 567 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 514 565 - -
Tsu08g01634 567 Gene3D - 223 279 - -
Tsu08g01634 567 SUPERFAMILY HIT/MYND zinc finger-like 232 276 - -
Tsu08g01634 567 Coils Coil 434 454 - -
Tsu08g01634 567 ProSiteProfiles Zinc finger RING-type profile. 522 555 IPR001841 -
Tsu08g01634 567 Pfam MYND finger 236 273 IPR002893 -
Tsu08g01634 567 ProSiteProfiles Zinc finger MYND-type profile. 236 273 IPR002893 -
Tsu08g01634 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 566 IPR013083 -
Tsu08g01634 567 PANTHER COPINE FAMILY PROTEIN 1 514 565 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu08g01634 Tsu-Chr8 19512067 19523969 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01634 200 273 Miscellaneous Gene Families AT4G31670 37.838 2.76e-10 61.2