Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01629 ATGTTGGACCTAAATTGGCTTCTTGGGTTGTTTGGTTCCTCGGCCAAGAAAGTAGACATTTCTGTTCATAGCAACATATTGGTGTCAATTGTGATTGGTGTTGTGTTGTTGTACTTGTACCGGTCGGGTGAAAGCGGAGAACTCAATTCCAATTATATCAATGAGGTTGATGAAGGTGAGTCAGAGGAGTACCCCGTCGATGAACCAGACCGTGATTTTGATTGGGATCAGCAGCATCATCACCGGACTTCCGAGCACGGTGTTCCATGTGCTTTCTGTGGTGATCAAAGCACCACTAGGTGCGCTAGCTGCAAGGTTGCTAGATATTGCTCCGTGGAATGCCAAATTGGACATTGGAGGTCGTGGCATAAATATGAATGCTTTAAAATAGAGACGGAAGAAGGTGAAGCAAGAGAGATTCATGGTCACCAAAACCCCATGCTTGACGAGAATTATGATAATGGTATCTCAAATGGAGTGGAATTGAGTTCTAATGTGGGAATAATGGATGCATCAAATATTAGTGATGTGAACAACTCTCATGTTGGTTGTGAACAATGTGGTAGCCCAAGTACCACCAGTTGCCCACGATGCAATGCCGTCAGATACTGTTCTACAATGTGTTTGATTACAAACTGGAAATGGCATAAATATAATTGCATTCCAGGGGAGGGGAGTTCATCTCCAACAGAGAGACCTAATAGAAATGAAGAGGaagaaaatattcattcatcTACTCCACTCTATTTGGAGCTTTATCCAGAAGGAACCTCAAACTCCATGTCTCTAACTAAAGTATCACAGGTGCATAATACTCGATCGGTGAAACACCTTGAAGATGAACTAGTAAAGTCTAGGAAAGAGATTTTTGCAATACAATCAGAGTGTGACGAGTGGAAGAAGCGAGCCAATTTCGCTAGAGAAAGGTTTCAAAGCTTCAAAGAAGAATCTGAACAACATTTGTCTGCGTTGAGAAATGAAAATGAGTCAATATCAAATGCTGAGAAGAAAGCTTACAATGTGATTCAGAGTTTACAGCTGCAGATTGCAGCACAAGAAAACATTGCAGAGATTGCAGAGAAAAGAAGACTAGAAGAACATATACAAATGTTAGagAGTGAATGTGCTATGCTGAAGAAAGAATTAGAAGAAGAGCACAAACATGTTCAATATCTTACACTAGAGTATAACAAGAGCCATGAGACTACACAAATTGCCATAAGAGAAGTTGAAGCGATAAAACAAGAGCTTTTAGAAGAGCGCGAACATGTCCAAGGAGTTAAAGAGAATTTGATTAGAGATGTTACAATCGCTAAATCAAGAGCTATTTTTGCTGAGGCAAAACTCAGTGATCTTCAGAGGAAAATCAAACTGACAGATTATAAGATTGTTGTCAAGACCGACAGTTTGGGCAAACCTTCTAGGGCATGCACTATATGTCGGACCAACGAAAAGGACATGGCCTTTGGGTGTGGACACATGACATGCAGAGACTGCGGATCAAAATTAGTAAAGTGTCCAATATGCCGCGAGCAGATCACAAGTCATATTAAGTTGTTTCCTGGGTGA 1569 0.4054 MLDLNWLLGLFGSSAKKVDISVHSNILVSIVIGVVLLYLYRSGESGELNSNYINEVDEGESEEYPVDEPDRDFDWDQQHHHRTSEHGVPCAFCGDQSTTRCASCKVARYCSVECQIGHWRSWHKYECFKIETEEGEAREIHGHQNPMLDENYDNGISNGVELSSNVGIMDASNISDVNNSHVGCEQCGSPSTTSCPRCNAVRYCSTMCLITNWKWHKYNCIPGEGSSSPTERPNRNEEEENIHSSTPLYLELYPEGTSNSMSLTKVSQVHNTRSVKHLEDELVKSRKEIFAIQSECDEWKKRANFARERFQSFKEESEQHLSALRNENESISNAEKKAYNVIQSLQLQIAAQENIAEIAEKRRLEEHIQMLESECAMLKKELEEEHKHVQYLTLEYNKSHETTQIAIREVEAIKQELLEEREHVQGVKENLIRDVTIAKSRAIFAEAKLSDLQRKIKLTDYKIVVKTDSLGKPSRACTICRTNEKDMAFGCGHMTCRDCGSKLVKCPICREQITSHIKLFPG 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01629 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 521 IPR013083 -
Tsu08g01629 522 MobiDBLite consensus disorder prediction 224 247 - -
Tsu08g01629 522 ProSiteProfiles Zinc finger RING-type profile. 477 510 IPR001841 -
Tsu08g01629 522 ProSiteProfiles Zinc finger MYND-type profile. 90 127 IPR002893 -
Tsu08g01629 522 SMART ring_2 477 509 IPR001841 -
Tsu08g01629 522 SUPERFAMILY HIT/MYND zinc finger-like 88 129 - -
Tsu08g01629 522 ProSiteProfiles Zinc finger MYND-type profile. 184 220 IPR002893 -
Tsu08g01629 522 SUPERFAMILY HIT/MYND zinc finger-like 179 221 - -
Tsu08g01629 522 Coils Coil 275 334 - -
Tsu08g01629 522 Pfam Zinc finger, C3HC4 type (RING finger) 475 515 - -
Tsu08g01629 522 SUPERFAMILY Tropomyosin 273 466 - -
Tsu08g01629 522 SUPERFAMILY RING/U-box 460 516 - -
Tsu08g01629 522 Coils Coil 342 388 - -
Tsu08g01629 522 Pfam MYND finger 90 127 IPR002893 -
Tsu08g01629 522 Pfam MYND finger 184 220 IPR002893 -
Tsu08g01629 522 Coils Coil 410 434 - -
Tsu08g01629 522 Gene3D - 72 132 - -
Tsu08g01629 522 Gene3D - 168 223 - -
Tsu08g01629 522 PANTHER COPINE FAMILY PROTEIN 1 12 520 - -
Tsu08g01629 522 PANTHER PROTEIN, PUTATIVE-RELATED 12 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01629 Tsu-Chr8 19379341 19387398 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01629 18 127 Miscellaneous Gene Families AT4G31670 27.273 2.20e-06 48.5