Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01628 ATGGGAAACTCACAGACAAAAAAGCATGACAGTCAATTTTCCGGAAATGTTGATTCACCAAGAATCACATCCACCCTAAACAGATCCCTCTCACCACAGTCGGAGTCAATTCGATTTCAACAACAGTTTTCTTCAACAAGTTCAGGGAAGCTTTCTACTAAGAAGAAATATGCTTTGATTCCTGATAACTTCACTACTCTTCAACAGGTTACAAGTGCTTTGAGGAATGAAGGTTTAGAATCCTCAAATCTTATCCTCGGAATCGATTTTACGAAAAGTAATGAGTGGACTGGAAGAAACTCATTCAATAATAGAAGCCTGCATGCTATTGGAGATACACCTAATCCTTACGAGAAAGCCATTTCTATTATTGGCAAGACTTTGGCTCCTTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCTACGACTCATGATCACGAAGTGTTTAACTTTCATGCTGATAACTCATCTTGTCATGGATTTGAGGAAGTTTTGGCTTGCTATCAAAAAGTCGTTCCAAACTTGAGTCTTTCGGgaCCAACTTCATATGCTCCAGTGATTGAGGCTGCAATAGACATAGTTGAGAAAACTCATGGCCAATTCCATGTTTTAGTTATTGTTGCAGATGGCCagGTTACAACAAATGGAAACAATGAAGATGGAAAACTAAGTCCTCAagaagagaagacaataaaaGCAATTGCTGATGCAAGTTCATATCCTCTTTCTATTGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGATATGAAAAAGTTTGATGACAAATTACCTGCTCGTGATTTTGACAATTTTCAGTTTGTTAACTTCACAGACATTATGTCTAAAAAAATTAGCACGTCTGCGAAAGAAGCTGCTTTTGCTCTGGCTGCACTTATGGAGATACCTTTCCAATATAAAGCAGTTCTTGAGCTAGGATTACTTGGTCATGCAACAGGAAGGGCAAAGAAAATGGTTCCAAGACCTCCTCCGGCTCCTTATTCTCGACCAATGCCACCAGATCATTTTCTGAGGAACATGTCAACAATAACATCATCAATCGATGACGAGCAAAATCAAATGGTATGTGCTATATGTCTGACCAATAGAAAGGATTTGGCCTTTGGATGTGGTCATATGACCTGCAGAGATTGTGGGTCAAGATTAAGCAATTGTCATATATGCCGCCAAAGGATCACCAATCGTCTAAGGGTGTATACTGGATGA 1239 0.389 MGNSQTKKHDSQFSGNVDSPRITSTLNRSLSPQSESIRFQQQFSSTSSGKLSTKKKYALIPDNFTTLQQVTSALRNEGLESSNLILGIDFTKSNEWTGRNSFNNRSLHAIGDTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDHEVFNFHADNSSCHGFEEVLACYQKVVPNLSLSGPTSYAPVIEAAIDIVEKTHGQFHVLVIVADGQVTTNGNNEDGKLSPQEEKTIKAIADASSYPLSIVLVGVGDGPWEDMKKFDDKLPARDFDNFQFVNFTDIMSKKISTSAKEAAFALAALMEIPFQYKAVLELGLLGHATGRAKKMVPRPPPAPYSRPMPPDHFLRNMSTITSSIDDEQNQMVCAICLTNRKDLAFGCGHMTCRDCGSRLSNCHICRQRITNRLRVYTG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01628 412 Pfam Zinc finger, C3HC4 type (RING finger) 364 404 - -
Tsu08g01628 412 SMART VWA_4 81 284 IPR002035 -
Tsu08g01628 412 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 33 411 - -
Tsu08g01628 412 SUPERFAMILY vWA-like 82 265 IPR036465 -
Tsu08g01628 412 CDD RING-HC_RGLG_plant 366 410 IPR045317 GO:0061630|GO:0070534
Tsu08g01628 412 Pfam Copine 106 319 IPR010734 -
Tsu08g01628 412 MobiDBLite consensus disorder prediction 1 43 - -
Tsu08g01628 412 PANTHER COPINE FAMILY PROTEIN 1 33 411 - -
Tsu08g01628 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 412 IPR013083 -
Tsu08g01628 412 SUPERFAMILY RING/U-box 351 406 - -
Tsu08g01628 412 ProSiteProfiles Zinc finger RING-type profile. 367 400 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01628 Tsu-Chr8 19368117 19375916 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01628 08 19368117 19375916 Tsu08g01628 08 19368117 19375916 ECH
Tsu06g01426 06 14029589 14033949 Tsu08g01628 08 19368117 19375916 PCT