Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01595 ATGTCATTCTCATGTATCAAGAAAATTTTCAATAAGTTTTGGGTTGATGAATTCCAAACTGATCTCTTGCCATCTCTTGGAGCAAGAATCAACCAAGAAATTCAACTAAGGAGATACATAATCTCCCCCTTCAATCCAAACTATAGGACTTGGGAGACGTGGTTGATAGTTCTAGTGGTTTACTCTGCATGGATATACCCCTTTCAATTCGCATTTCTACCTTTTAAGATTGATACACTATTCATAGTAGATAACATTGTGAATGGTTTCTTTGCCATTGACATAGTGATGACATTCTTTGTTGCATATCTTGATGAACATTCTTACCTTCTTGTTGGTGATCCTAAGAAAATTGCGGTCAGGTACTTAAGTACATGGTTTATCTTTGATGTTTGTTCAACTGCACCTTTTCAATCTATTAGCTCGTTATTCACCGATAATAGCAACGAGATTGGATTCAAAATTCTTAACATGCTTCGGTTATGGCGTCTTAGACGAGTTAGTTCTCTGTTTGCAAGACTTGAGAAAAACATTCACTACAATTACTTTTGGACTAGGTGCTTGAAGCTCATTGCTGTGACCTTGTTTGCAGTACATTGTGCTGGATGCGTAAATTATTTAATTGCAGATAGGTACCATGATTCAAAAAGGACATGGATTGGTTCTGTGTACccaaattttaaagaaatgaGTCTTTGGGATAGATATGTAACATCAATGTATTGGTCAATTGTGACACTAACTACAACTGGATATGGAGATTTACATGCTAATAACACTGCTGAGATGCTGTTTGACATTTTCTACATGTTGTTCAACTTGGGATTAACAGCTTATATCATTGGAAACATGACAAATCTTGTTGTTCAATGGACAAGTCATACCAGAAATTTTAGAGATACAGTCAGAGCAGCTTCAGAATTTGCAACAAGAAATCATCTGCCTCATGATAAACAAGatcaaatattatcatatttatGTTTGAGGTTCAAAACAGAAGGATTAAAGCAACAAGAAACAATTAATTGCATGCCGAAAGCAATTCGTGCAAGTATTACACACCATTTGTTTTATCCTGTTGTTCAGAATTCATATCTCTTCAAAAGAGTTTCAAATGACTTTCTTTTTCAACTGgtTACAGAAATGGAAGCTGAGTATTTTCCACCAAAAGAAGATGTTATTCTTCAAAATGAGTCTCCAACAGATCTTTACATGTTGGTTTCAGGAGCAGTGGAACTCATTCACAATGTTGATGGTCGTGATCAAGTTTTGCAGACGGAAATAAGTTCAGGAGACACAATTGGAGAGATCGGAGTTTTATACAATAGACCACAACCTTTCACTGTTAGGACCAAaaagctttcacaaattttaagaCTTAGCAGAACTTCATTGATGAATGCCCTTCATGCAAATCCAGAAGCAGCACCAATTATAATGACAAATCTTATCATGAAGTTAAATGGACAAGAAGATTTGGGTTTTGAATATCCACCAATAGACACAAAATTGGCTCTTCATGGCATGCATGATGTGAACCATACAATTGCAAATTCATGTCTTGAATGTACAAAAAATTCACATAGATTATTGTATGAAATGATACCTAACATGGTTGAAAACCAGCCAGaacaagaagaaaatgaaaagaatctAAGTCCTGTTAGATGGAAACAGAAAGCAATAGTTGAAAAGCAACAAAATAAGAGTCATgaaaatggaaagaaattaGATGAACATATAATAGAGTTTATGGAGACAGATGTTAGGAGTGACCAAATTTCTTTAGCAACAAGTAATCAtcaaattgagagaaaaaaagaatttttttttaataagagagTTACCATTCACTATCTAGGCCAAGAAAATGCTACCTTACAAGGACAACATGGAAAGTTGATAATTCTACCTGATTCATTGGAAGAGCTTCTCAAGATTGTTGGAGAAAAGTTTGGAGGGCCAAAGCCTAACAAAATAATGAACGTGGAGAATTCTGAGATAGATGACTTGTGTGTCATTCGAGATGGTGACCATCTGTTTTTTCGTTGCAGCGACAGTGAATTTTTGAGCTAA 2076 0.3357 MSFSCIKKIFNKFWVDEFQTDLLPSLGARINQEIQLRRYIISPFNPNYRTWETWLIVLVVYSAWIYPFQFAFLPFKIDTLFIVDNIVNGFFAIDIVMTFFVAYLDEHSYLLVGDPKKIAVRYLSTWFIFDVCSTAPFQSISSLFTDNSNEIGFKILNMLRLWRLRRVSSLFARLEKNIHYNYFWTRCLKLIAVTLFAVHCAGCVNYLIADRYHDSKRTWIGSVYPNFKEMSLWDRYVTSMYWSIVTLTTTGYGDLHANNTAEMLFDIFYMLFNLGLTAYIIGNMTNLVVQWTSHTRNFRDTVRAASEFATRNHLPHDKQDQILSYLCLRFKTEGLKQQETINCMPKAIRASITHHLFYPVVQNSYLFKRVSNDFLFQLVTEMEAEYFPPKEDVILQNESPTDLYMLVSGAVELIHNVDGRDQVLQTEISSGDTIGEIGVLYNRPQPFTVRTKKLSQILRLSRTSLMNALHANPEAAPIIMTNLIMKLNGQEDLGFEYPPIDTKLALHGMHDVNHTIANSCLECTKNSHRLLYEMIPNMVENQPEQEENEKNLSPVRWKQKAIVEKQQNKSHENGKKLDEHIIEFMETDVRSDQISLATSNHQIERKKEFFFNKRVTIHYLGQENATLQGQHGKLIILPDSLEELLKIVGEKFGGPKPNKIMNVENSEIDDLCVIRDGDHLFFRCSDSEFLS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01595 691 Gene3D - 49 289 - -
Tsu08g01595 691 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g01595 691 PRINTS EAG/ELK/ERG potassium channel family signature 84 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g01595 691 PRINTS EAG/ELK/ERG potassium channel family signature 95 104 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g01595 691 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g01595 691 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g01595 691 CDD CAP_ED 366 476 IPR000595 -
Tsu08g01595 691 SUPERFAMILY cAMP-binding domain-like 293 484 IPR018490 -
Tsu08g01595 691 Pfam Ion transport protein 49 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu08g01595 691 PANTHER POTASSIUM CHANNEL KAT1 1 682 - -
Tsu08g01595 691 Pfam KHA, dimerisation domain of potassium ion channel 613 682 IPR021789 -
Tsu08g01595 691 ProSiteProfiles cAMP/cGMP binding motif profile. 366 486 IPR000595 -
Tsu08g01595 691 PANTHER POTASSIUM CHANNEL AKT1 1 682 IPR045319 GO:0005249|GO:0006813
Tsu08g01595 691 SUPERFAMILY Voltage-gated potassium channels 43 289 - -
Tsu08g01595 691 Gene3D Jelly Rolls 359 488 IPR014710 -
Tsu08g01595 691 SMART cnmp_10 366 484 IPR000595 -
Tsu08g01595 691 Pfam Cyclic nucleotide-binding domain 386 470 IPR000595 -
Tsu08g01595 691 ProSiteProfiles KHA domain profile. 614 691 IPR021789 -
Tsu08g01595 691 Gene3D Helix hairpin bin 290 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01595 Tsu-Chr8 18859120 18865965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01595 1 682 Ion Channels AT5G46240 58.333 0.0 814