Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01579 ATGGCTTCCGAGAAGAAACTCTCGAACCCCATGAGGGAAATCAAGGTTCAGAAACTTGTCCTCAATATCTCCGTCGGTGAAAGTGGAGATCGTCTTACCAGAGCCGccaagGTGTTGGAACAACTAAGTGGTCAAACCCCAGTGTTTTCTaaagCAAGGTACACTGTACGTTCTTTTGGTATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAAAGTGGTTTGAAGGTGAAGGAATATGAATTGCTGAGAAGAAACTTTAGTGATACCGGGTGTTTTGGATTTGGTATTCAGGAGCATATTGATTTGGGAATTAAGTATGATCCTTCAACCGGTATTTATGGGATGgacttttttgttgttttggagcGCCCTGGTTACAGAGTGGGACGTCGTCGTAGGTGCAAGGCTCGTGTTGGGATCCAACATCGTGTCACAAAGGATGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAATCATTTTGAATAAGTCACATGCAATATAG 543 0.4088 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGIILNKSHAI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01579 180 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 171 IPR002132 GO:0003735|GO:0005840|GO:0006412
Tsu08g01579 180 Pfam Ribosomal protein L5 9 62 IPR031310 -
Tsu08g01579 180 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 180 IPR002132 GO:0003735|GO:0005840|GO:0006412
Tsu08g01579 180 PANTHER 60S RIBOSOMAL PROTEIN L11-1 1 180 - -
Tsu08g01579 180 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Tsu08g01579 180 Gene3D - 2 177 IPR022803 -
Tsu08g01579 180 SUPERFAMILY RL5-like 8 173 IPR022803 -
Tsu08g01579 180 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01579 Tsu-Chr8 18669948 18672766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01579 1 180 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 95.556 2.26e-129 358