Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g01558 | ATGAGAGGGAAAAACACCCATCTGTTATTTTGTACTAGCGGTATATTACTCCGAAGGTTGCTGAGTGATCGAAACCTGAGTGGTATAACCCATGTGTTTGTGGATGAAATTCACGAGCGAGGCATGAATGAAGACTTCTTACTGATTGTGTTGAAGGATCTTCTTCCACGTCGTCGTGATTTAAGATTGGTATTGATGAGTGCCACTTTGAATGCTGaacttttttcaaattattttggaGGTGCACCGACATTTCATATCCCGGGTTTCACCTATCCTGTAAGAGCTCACTTTTTAGAAGATGTTTTGGAGATTACTGGATATAAGTTGACATCTTTCAACCAAGTTGATGATTACGGTCAAGATAAATTGTGGAAAACACAAAAGCAGCTTGCACCGCGGAAGAGGAAAAACCAGATCACTGCTCTTGTTGAGGATGCTCTTTCTAAATCAAGTTTTGAGACCTATAGTCCCAAGACACGCGACTCATTATCTTCATGGGCTCCTGACTGCATAGGATTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGTGCCGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGTTGTTTAAGAGATCAACTTAAAGCACACCCTCTTTTAGGAGATCCAAACAGGGTTCTGCTTCAAACATGCCACGGTTCAATGGCAACTTCTGAACAGaaACTCATCTTTGATAAACCACCTCCAAATGTAAGGAAAATAGTACTTGCTACAAATATGGCAGAGGCAAGTATTACGATCAATGACATAGTTTTTGTCATAGACTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACACCATGTCTACTACCTTCTTGGATCTCACAAGCATCTGCACGGCAGAGAAGAGGCAGGGCTGGTCGTGTGCAGCCAGGAGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCAGAACTTTTGAGAACACCTTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATTGGAGAATTCCTATCATCAGCTTTGCAGGCACCAAAACCACGTACCGTCCAAAATGCTATTGATTTTCTCACGATGATTGGAGCAttagatgaaaaagaaaatcttaCCAATCTTGGGAAGTTTCTCTCGATACTTCCTGTTGATCCCAAGCTGGGAAAAATGCTGATAATGGGAGCTATATTTCGGTGCTTTGATCCTGTTCTTACAATAGTTGCTGGCCTTAGTGTCAGGGATCCTTTCCTTTTGCCCCAAGACAAGAGAGATTTAGCAGGGACTGCAAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGACGCTGAAAGAGAAGGATCAGCTTATGAATACTGCTGGAGAAATTTTCTTTCTGCCCAAACTCTTCAGGCAATTCATTCACTTCGAAAACAGTTCAGCTTCATCTTGAAAGAAGCTGGCTTGGTAGATACAGATTCAAGCATTAATAACAAATTGAGCCACAATCAGTCTCTTGTCCGTGCAGTCATATGTTCTGGGCTCTTTCCTGGCATAGCATCGGTGGTGCATAGGGAGACATCCATGTCATTTAAGACAATGGACGATGGCCAGGTTTTATTATATGCAAATTCAGTGAACGCACGTTACCAGACTATTCCTTACCCGTGGTTGGTTTTCGGTGAGAAAGTAAAGGTCAATGCTGTTTTCATCCGTGATTCCACCGGTGTATCTGATTCAATACTTATCCTATTTGGTGGGGCTCTAAGTAATGGGATACAGGCGGGGCATCTGAAAATGTTAGATGGGTACGTTGACTTCTTTTTGGATCCTAATTTAGCTGACTGCTATTTGAAGCTTAAGGATGAACTAGATAAGCTTATCCAAAAGAAGCTAGAAGATCCTGGCATTGACATTCACAAGGAAGGGAAGTACTTGATGCTTGCTGTTCAGGAGTTGGTCTCAGGGGATCAGTGTGAAGGAAGATTTGTATTTGGCCGTGACAGCCGGAAGCCTAAGGCCTCTAACGACGAGAATAAATTCACAAAAGATGGGACAAACCCCAAAAGCTTGCTGCAAACACTTTTGATGCGAGCAGGGCACACCCcaccaaaatacaaaacaaaacatctcAAGACAAATGAGTTCAGGGCATTGGTAGAGTTTAAAGGAATGCAATTTGTTGGCAAACCGAAAAGGAATAAGCAGCTTGCAGAAAGGGATGCTGCCATAGAGGCACTGGCTTGGTTAACTCACACCTCCGACAATACTCAACATGAAGACGATAAATCTCCCCCTGATGTTACTGACAACATGTTAAAACTCCTAGGGAAGCGTAGAAAATCAAAACGACATTTTGATTAA | 2430 | 0.4119 | MRGKNTHLLFCTSGILLRRLLSDRNLSGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDVLEITGYKLTSFNQVDDYGQDKLWKTQKQLAPRKRKNQITALVEDALSKSSFETYSPKTRDSLSSWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLQTCHGSMATSEQKLIFDKPPPNVRKIVLATNMAEASITINDIVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSSALQAPKPRTVQNAIDFLTMIGALDEKENLTNLGKFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDTDSSINNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFLDPNLADCYLKLKDELDKLIQKKLEDPGIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRDSRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNTQHEDDKSPPDVTDNMLKLLGKRRKSKRHFD | 809 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g01558 | 809 | MobiDBLite | consensus disorder prediction | 689 | 706 | - | - | |
| Tsu08g01558 | 809 | PANTHER | DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL | 1 | 703 | - | - | |
| Tsu08g01558 | 809 | Pfam | Helicase conserved C-terminal domain | 179 | 309 | IPR001650 | - | |
| Tsu08g01558 | 809 | Pfam | Helicase associated domain (HA2) | 373 | 459 | IPR007502 | GO:0004386 | |
| Tsu08g01558 | 809 | Gene3D | - | 1 | 89 | IPR027417 | - | |
| Tsu08g01558 | 809 | PANTHER | ATP-DEPENDENT RNA HELICASE | 1 | 703 | - | - | |
| Tsu08g01558 | 809 | SMART | ha2_5 | 372 | 463 | IPR007502 | GO:0004386 | |
| Tsu08g01558 | 809 | SMART | helicmild6 | 204 | 310 | IPR001650 | - | |
| Tsu08g01558 | 809 | MobiDBLite | consensus disorder prediction | 774 | 809 | - | - | |
| Tsu08g01558 | 809 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 471 | IPR027417 | - | |
| Tsu08g01558 | 809 | SUPERFAMILY | dsRNA-binding domain-like | 703 | 787 | - | - | |
| Tsu08g01558 | 809 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 88 | IPR014001 | - | |
| Tsu08g01558 | 809 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 529 | 610 | IPR011709 | - | |
| Tsu08g01558 | 809 | Pfam | Double-stranded RNA binding motif | 710 | 772 | IPR014720 | - | |
| Tsu08g01558 | 809 | Gene3D | - | 171 | 329 | IPR027417 | - | |
| Tsu08g01558 | 809 | SMART | DRBM_3 | 710 | 773 | IPR014720 | - | |
| Tsu08g01558 | 809 | MobiDBLite | consensus disorder prediction | 689 | 709 | - | - | |
| Tsu08g01558 | 809 | CDD | SF2_C_RHA | 165 | 318 | - | - | |
| Tsu08g01558 | 809 | CDD | DEXHc_RHA-like | 3 | 87 | - | - | |
| Tsu08g01558 | 809 | MobiDBLite | consensus disorder prediction | 777 | 798 | - | - | |
| Tsu08g01558 | 809 | Gene3D | - | 352 | 454 | - | - | |
| Tsu08g01558 | 809 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 176 | 350 | IPR001650 | - | |
| Tsu08g01558 | 809 | Gene3D | - | 689 | 774 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g01558 | Tsu-Chr8 | 18259012 | 18271255 | Dispersed/Transposed |