Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01556 atggcaaaaaaatttCCACATTCACAACACCTACTTCTTCTAATCTTCTTCCTTTCCATCATCAATCTTTCACAACAGTTACAATATTCTCAATCTCAAACACTTCTCAAACTTCAACAACTTCTTGGTTACCCTTCAACATTAACAACCTTAAGCAGCACCAAAGATTTCTGCAACATTGAACCTAATGCTTATTTCACACTAGTGTGTTATGAAGACAATTTAACACAGTTGCATGTTGCTGGAAACAAAAATGAGTTCACTACATTGCCTCAAAATTTCAACTCATACACACTTTTTTCAACACTTTCCACTCTTTCAAGCTTGAAAGTTCTTTCTTTAGTTTCTCTTGGTTTATGGGGTCCTTTACCTGAAACCATAGCTCAATTATCTTCATTGGAAATACTAAACATTACTTCAAATTATTTCAGTGGAGTTATACCATTTCAACTTTCACATCTTAATAATCTTCAATCATTAGTACTTGATGATAACAATTTCAATGGTGAAATTCCAAATTTAGGTTCACTTCAAGGTTTGGTTGTACTTAGTATGAAGAAAAATTACCTTAGTGGTAACTTACCAAATTCATTGAATGATCTTGTTACTCTTAGAGTATTAGATCtatcaaataatcaattatttggTGAATTACCTCATCTTCATAATTTGGTTAATCTTCAAGTTCTTCACTTAGAAAATAACACATTAGGACCACATTTTCCATCACTTCCTACAAAGTTAGTTTCACTTGTGATTAGAAACAATAGTTTTCGACTCGGTGTACCTTCTAATATAAGTTCTTTCTATCAACTTCAAAAATTAGACCTTTCTTTGAACGGTTTTGTCGGGCCATTTCCGCCGTCTTTATTGTCATTACCTTCAATAAACTACCTTGATGTTTCTTCAAATAAGTTCACTGGTATGCTTTTCAAGAATTTTTCATGCAATGATGATCTTCAATTTGTGAATTTGTCTTCAAATTATTTGAAAGGTGAACTACCTAGTTGTTTGAGACCAAAGAAAACAAAGGTTGTTTTGTTTGCTGGAAACTGTTTTTCAAATGTGAAACATGGTCAACATAGTTACAGTTTTTGCAGCAGTGAAGCTTTAGCAGTGAATATCACACCTCATCAAGAACAGAAACATAAGGGAACAGCAAGTAAAACAGTATTTGTCTCTTCAAGTTTAGGAGTTGTTGGAGTATTGATTGTTGCAGTTGTTATATTTGTTGTTAATGAAATTCATAAGAAAAATGTTGTGAAAACAACTTCAATGTCTACATTGGAAGATGTTATACAGAATGAAGATAAAGAGAAAACTACTGCAAGGTCTATTGTGGAGAATATCATCAAAAAGGTTCCTGATAAACAAGCTGTGAAAACACTGACAAAATCCTTAAAGGAACAGATAGTGAGCCGAGTCGGTAATAGGCGCCATGTTAGGAGGCCTTCGAGGTCCATCATTGAACATGTATCATCAGTAAACACTGCAAAACTACTCACAGATGCAAGATGTATATCTGAAACAATGAAGATGGGAACTGGTCTTCCTGCTTATAGGACCTTTGCTTTGGACCAACTTAAGGAAGCTACAAATAATTTTGATGAATCAAGTCTCATAAGTGAAGGTCCACTTGGTCAGATATATAAAGGGGTTCTTTCTGATGGGATGAATATTACTATAAGAGGAATGAAGATAAGAAAGAAACACAGCCCTCAGGCCTATATGCACCATGTTGAATTGATTTCAAAACTTAGGCATTCACACTTGGTTAGTTCACTTGGACATTCTTTTGAGTGCAACCAAGAAGATTCAACTGTCAACACTATATATCTCATATTTGAGTTTATTCAAGACAAAAGTTTAAGAAGCCGCATCTCCTTAGGAGCAAATGGAGAAAAGCTTTGTTGGACACAAAGAATAGCAGCTACTATTGGAGTAGTGAAAGGCGTTCAATTTTTGCATACCGGGATAGTGCCTGGACTGTACTCAAATAATCTCAAGATAACTGATATTCTTTTGGATAACAATCTTAATGTGAAAATAAGCAGTTATAATCTGCCAATCTATGCAGAAAACAAAAGAATGGTAAATGGATAA 2103 0.3371 MAKKFPHSQHLLLLIFFLSIINLSQQLQYSQSQTLLKLQQLLGYPSTLTTLSSTKDFCNIEPNAYFTLVCYEDNLTQLHVAGNKNEFTTLPQNFNSYTLFSTLSTLSSLKVLSLVSLGLWGPLPETIAQLSSLEILNITSNYFSGVIPFQLSHLNNLQSLVLDDNNFNGEIPNLGSLQGLVVLSMKKNYLSGNLPNSLNDLVTLRVLDLSNNQLFGELPHLHNLVNLQVLHLENNTLGPHFPSLPTKLVSLVIRNNSFRLGVPSNISSFYQLQKLDLSLNGFVGPFPPSLLSLPSINYLDVSSNKFTGMLFKNFSCNDDLQFVNLSSNYLKGELPSCLRPKKTKVVLFAGNCFSNVKHGQHSYSFCSSEALAVNITPHQEQKHKGTASKTVFVSSSLGVVGVLIVAVVIFVVNEIHKKNVVKTTSMSTLEDVIQNEDKEKTTARSIVENIIKKVPDKQAVKTLTKSLKEQIVSRVGNRRHVRRPSRSIIEHVSSVNTAKLLTDARCISETMKMGTGLPAYRTFALDQLKEATNNFDESSLISEGPLGQIYKGVLSDGMNITIRGMKIRKKHSPQAYMHHVELISKLRHSHLVSSLGHSFECNQEDSTVNTIYLIFEFIQDKSLRSRISLGANGEKLCWTQRIAATIGVVKGVQFLHTGIVPGLYSNNLKITDILLDNNLNVKISSYNLPIYAENKRMVNG 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01556 700 ProSiteProfiles Protein kinase domain profile. 535 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01556 700 Gene3D Transferase(Phosphotransferase) domain 1 619 697 - -
Tsu08g01556 700 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Tsu08g01556 700 Gene3D Ribonuclease Inhibitor 152 241 IPR032675 -
Tsu08g01556 700 Gene3D Ribonuclease Inhibitor 242 360 IPR032675 -
Tsu08g01556 700 Gene3D Phosphorylase Kinase; domain 1 496 617 - -
Tsu08g01556 700 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 471 695 - -
Tsu08g01556 700 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 11 412 - -
Tsu08g01556 700 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 471 695 - -
Tsu08g01556 700 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 412 - -
Tsu08g01556 700 SUPERFAMILY Protein kinase-like (PK-like) 515 689 IPR011009 -
Tsu08g01556 700 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Tsu08g01556 700 SUPERFAMILY L domain-like 87 354 - -
Tsu08g01556 700 Pfam Protein tyrosine and serine/threonine kinase 540 693 IPR001245 GO:0004672|GO:0006468
Tsu08g01556 700 Gene3D Ribonuclease Inhibitor 30 151 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01556 Tsu-Chr8 18233575 18238322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01556 44 693 Miscellaneous Gene Families AT3G03770 47.786 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Tsu08g01556 PK_Tyr_Ser-Thr 1e-09 CL0016