Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01520 ATGTCAACCCCATCAATATCCTTCATAGTtccttttctttcctttttccttCTTTTACCCTTACTCCTCCTAGCTCAACCACCTTCTCCATCTCCATCTCCTTCTCCTACTACTTCTATTTCTACCTCCAAAGCATGCAAATCAACATTATATCCAAAACTATGCCGTTCGATTCTCTCCTCCATCCGTTCGTCACCAACTGATCCATACCACTTAGGAAAATTCTCCATAAAACAAAGCCTAAAACAAGCCAAAAAACTATCCAAAGTATTCAAAGACTTTCTCAAAAAACACCATCAATCTTCTCTTAACCAAGCCGAAATCGCCGCACTAGACGATTGTAGTGAACTAAACCAACTCAATGTAGACTACTTAGAGTTAGTTAGAGATGTACTAAAATCAGCTGATTCATCATCTTTCAATAACACCGATGTGTTGGTGGAAAATGTTGAAACTTATCTTAGTGCTGTGGCTACTAACCATTATACTTGTTATGATGGATTGGTTGTGACTAAAAGTAACATTGCTAATTTACTTGCTATTCctttgagtaatgttacacaATTGTATAGTATTTCACTTGGGTTGGCAACACAAGcattgaataaaaatattaagaaacaTAAGACTCGTAAACACGGTCTTCCTACTAAGACTTTTAAGGTCAGACAGCCACTTAAAAAGCTCATTAAGCTTCTTCGAACAAAATTCAGTTGCAATAATTCATCCAACTGTACAAGAACAGAAAGGATTCTACAAGAAAGTGAAAACAAAGGAATTCTACTTAAAGAATTTGTTATTGTGAGTCTTGATGGAACAGAAAACTTTACTTCAATTGGAGAAGCTATTGATACTGTACCTAATAATTTAAAAGCAGAAGATGGCTATTTTCTTATCTATGTTAAAGAAGGATTATATGAGGAATATATCACCATtccaaaacaaaagaagaatatTTTGCTTATTGGTGATGGAATTGATAAGACTTGTATCACAGGAAATCATAGTGTTGTTGATGGTTGGAcaacttttaattcttcaaccTTTGCTGTGTCTGGAGAAAGATTTATAGCAGTGGACATAACATTCAGAAACACAGCAGGACCTGCAAAGCACCAAGCAGTAGCAGTAAGAAACAATGCAGACCTTTCCATATTCTACCGTTGTAGTTTTGAAGGATATCAAGACACACTCTATGTTCACTCACTGAGACAATTCTATAAACAATGTGATATCTACGGCACAGTCGATTTCATTTTTGGTAACGCCGCGGCAGTACTTCAAAGTTGTAACATCTATGCAAGAAAACCAATGgcaaatcaaaaaaatgctgTAACAGCACAAGGTAGAACTGATCCAAATCAAAACACAGGAATCTCAATACAAGATTGTAGGATTGATGCTGCACAAGACTTATCTGAAGATAtgaattttactaaaaattacTTAGGAAGACCATGGAAAATTTATTCAAGAACTGTTTATTTACAATCATATATTGGTGATTTGATTCAACCTTCTGGATGGTTAGAGTGGAATGGTACAGTTGGATTAGATACACTTTTTTATGGTGAGTTTGATAATTTTGGACCTGGTGCTATAACTAATAATAGGGTACAATGGCATGGTTATAATTTGTTGACACCTTCTCAAGCTTGGAATTTTACTGTCCTTAATTTTACTTTGGGGAATACTTGGATTCCTGATACAGATGTACCTTACACTGAAGGACTACATGATGATTGA 1746 0.331 MSTPSISFIVPFLSFFLLLPLLLLAQPPSPSPSPSPTTSISTSKACKSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKKLSKVFKDFLKKHHQSSLNQAEIAALDDCSELNQLNVDYLELVRDVLKSADSSSFNNTDVLVENVETYLSAVATNHYTCYDGLVVTKSNIANLLAIPLSNVTQLYSISLGLATQALNKNIKKHKTRKHGLPTKTFKVRQPLKKLIKLLRTKFSCNNSSNCTRTERILQESENKGILLKEFVIVSLDGTENFTSIGEAIDTVPNNLKAEDGYFLIYVKEGLYEEYITIPKQKKNILLIGDGIDKTCITGNHSVVDGWTTFNSSTFAVSGERFIAVDITFRNTAGPAKHQAVAVRNNADLSIFYRCSFEGYQDTLYVHSLRQFYKQCDIYGTVDFIFGNAAAVLQSCNIYARKPMANQKNAVTAQGRTDPNQNTGISIQDCRIDAAQDLSEDMNFTKNYLGRPWKIYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFDNFGPGAITNNRVQWHGYNLLTPSQAWNFTVLNFTLGNTWIPDTDVPYTEGLHDD 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01520 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 15 199 IPR006501 GO:0004857
Tsu08g01520 581 Pfam Plant invertase/pectin methylesterase inhibitor 43 195 IPR006501 GO:0004857
Tsu08g01520 581 SUPERFAMILY Pectin lyase-like 263 577 IPR011050 -
Tsu08g01520 581 CDD PMEI-like_3 45 207 - -
Tsu08g01520 581 SMART PMEI_2 35 196 IPR006501 GO:0004857
Tsu08g01520 581 Pfam Pectinesterase 266 563 IPR000070 GO:0030599|GO:0042545
Tsu08g01520 581 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Tsu08g01520 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 200 IPR035513 -
Tsu08g01520 581 PANTHER PECTINESTERASE 11 578 - -
Tsu08g01520 581 PANTHER PECTINESTERASE 11 578 - -
Tsu08g01520 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 199 IPR035513 -
Tsu08g01520 581 Gene3D - 261 578 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01520 Tsu-Chr8 17817267 17821134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01520 45 578 Carbohydrate Esterase AT3G10720 60.517 0.0 676
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00155 03 1289920 1294131 Tsu08g01520 08 17817267 17821134 PCT