Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01519 ATGTCTTCCTTTAAGGCCTATGGTAAAGTCGATGAATCCGAGCATGCCCTATTTGAAGTTCAAAGGAAATCTCGAAAGCGGATAACAATCATAAGCTTGTCCACAGTTGTCCTTGTCGGTATTGTATTTGCAGCGGTTTTCGGAACCATTGCTCACAACAATGCTCATAATGATGACAACAACAACGACAACAATGATCAATCTCTTTCAAGTTCGGTGAAGGCTATTTGTGATATTACATTGTACAAGGATTCATGTGAAAGTAGCCTTAGTCCTCTAGTTCATTCGGGTCAACAAATTCGACCCGAGGAGTTGTTCAAGTTGTCAATtcaagttgcattaaatgcggTTTCGAAAGGTTTTCAGTATTTTTCGGAGCATGGAACTTTTGATGACTTGAATTTGAATGTTGATAATAGAACAAAGGAAGCTTTGATGAATTGTAAGGATCTTTTGGATCTTGCTATTGATCATTTGAATAATTCTTTGTCTTATGAGGGGAAGTCTTCTTTGCTTGATGTTTTGGAGGACCTTGAAACTTGGTTGAGTGCTTCAgGTACTTACCAGCAAACATGCATGGATGGTTTAGAAGAGGCAGAAGAAGCATTAAAGTCCAGCATTACAACCAATCTCAAAAACTCTACAGAACTCACAAGCAACAGTCTAGCAATCATCACATGGCTTAACAAGGCTGCAAATTCAGTAAACTTTCGACGACGCTTATTGAGTTTATCTCATCAAAATGAACAACCAAATTGGCTTCATCATAAAGACAGAAAGTTACTTCAAAAAGACACTGATTTGAAGAAGAAAGCCGATATTGTTGTAGCGAAAGACGGGAGTGgaaaatacaaaacaatttCGGATGCATTGAAACATGTCCCTGATAAAAGTGACAAAAGGATTGTGATTTATGTGAAAAATGGGACTTATTATGAAAATGTTAGGGTGGAAAAGACTAAATGGAATGTTATGATTATTGGTGATGGTATGAATGTTACTACTGTTTCTGGTAGTCTAAATTTTGTGGATGGCACACCAACCTTTTCAACAGCAACATTTGCTGTATTTGGTAAGAATTTCATTGCTAGGGACATAGGCTTTAAGAACACAGCTGGTCCACAAAAGCACCAAGCAGTAGCACTAATGACAAGTGCAGATCAAGCAGTTTTCTACAAATGTTCCATAGATGCATATCAAGACACACTCTACGCTCACTCGAATCGCCAATTCTACCGCGAATGCAACATCTATGGAACAGTCGATTTCATTTTCGGAAACTCAGCCGTTGTCTTACAAAACTGCAACATTTTACCAAGACAACCGATGCAAGGACAACAGAACACAATAACAGCACAAGGAAAAACTGATCCTAACATGAACACAGGaatttcaattcaaaattgCAATGTTTCGCCATTCGGAAACTTAAGTTCTGTTAAAACATATTTAGGAAGACCATGGAAGAATTACTCGACGACGGTGTTTATGCAATCTACATTGGGAGATTTTATTAGTCCAAATGGTTGGTTACCTTGGGTTGGAGACTCTGCACCAGATACTATATTCTATGCTGAATTTCAAAATGTTGGAAAAGGTTCTTCAACAAAGAATAGGGTGAAGTGGaaaggtttgaaaaatattacaaGTAAAGAAGCTAAGAAATTTACAGTTAAGGCTTTTCTTTCCGGTGATAGATGGATTCCTGCTTCTGGTGCTACATTTAAATCATCTCTTTAA 1740 0.3649 MSSFKAYGKVDESEHALFEVQRKSRKRITIISLSTVVLVGIVFAAVFGTIAHNNAHNDDNNNDNNDQSLSSSVKAICDITLYKDSCESSLSPLVHSGQQIRPEELFKLSIQVALNAVSKGFQYFSEHGTFDDLNLNVDNRTKEALMNCKDLLDLAIDHLNNSLSYEGKSSLLDVLEDLETWLSASGTYQQTCMDGLEEAEEALKSSITTNLKNSTELTSNSLAIITWLNKAANSVNFRRRLLSLSHQNEQPNWLHHKDRKLLQKDTDLKKKADIVVAKDGSGKYKTISDALKHVPDKSDKRIVIYVKNGTYYENVRVEKTKWNVMIIGDGMNVTTVSGSLNFVDGTPTFSTATFAVFGKNFIARDIGFKNTAGPQKHQAVALMTSADQAVFYKCSIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNILPRQPMQGQQNTITAQGKTDPNMNTGISIQNCNVSPFGNLSSVKTYLGRPWKNYSTTVFMQSTLGDFISPNGWLPWVGDSAPDTIFYAEFQNVGKGSSTKNRVKWKGLKNITSKEAKKFTVKAFLSGDRWIPASGATFKSSL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01519 579 CDD PMEI-like_3 75 230 - -
Tsu08g01519 579 Pfam Plant invertase/pectin methylesterase inhibitor 72 224 IPR006501 GO:0004857
Tsu08g01519 579 Pfam Pectinesterase 273 565 IPR000070 GO:0030599|GO:0042545
Tsu08g01519 579 PANTHER PECTINESTERASE 5 577 - -
Tsu08g01519 579 Gene3D - 268 579 IPR012334 -
Tsu08g01519 579 PANTHER PECTINESTERASE 5 577 - -
Tsu08g01519 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 230 IPR035513 -
Tsu08g01519 579 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Tsu08g01519 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 228 IPR035513 -
Tsu08g01519 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 228 IPR006501 GO:0004857
Tsu08g01519 579 SUPERFAMILY Pectin lyase-like 271 575 IPR011050 -
Tsu08g01519 579 SMART PMEI_2 68 224 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01519 Tsu-Chr8 17810041 17813369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01519 1 579 Carbohydrate Esterase AT3G10710 58.003 0.0 683