Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01489 ATGAATACATCACAACAGAATATGACATGTACTAAAAAGTTTCTAAGCTTCATTCTACTTCATATATTCTTCTTAACCTTAACAAATGCACAATCACCATTTTACATGGTAAGTTTTTGCCAAAATTCaacagaaaaaacaaatatcacatcatACCGATCCAACGTTAACAACGTCCTTTCATGGATAAACTCAAATTCTGCTGCAGGAACAGTATCTAACCAGACCGTGGTACACAGCAGCAACCACGATGATGATGTTTATGGATACTACGATTGTCGTGGTGACATCACAGGAAGTTTCTGTCAATTTTGTCTCACCACTGCTGTCAATGATATCACTCAACGTTGTCCCAACGGGGTTACGGCTATGATATGGTATGATATATGCATCGTCGGATATGCTAACCAATATTTCCCAGGAAAAGTTACTTTAACCCCATCATGGAATTTAACCGGATCCAAAAGCGTGAAGGACTCAACTGACCTTGGGAAAGCAGTAAATTACATGAGGTATTTGATAGGCAAAGTGACTACAAAAGCCAATAATCATTGGGCAATGGGTGAGTTCAATTGGAGTGACAATGAGAAAAGCTATGCTTGGGTGCAGTGTAGTAGAGATATTAGTAAGGATGGATGCAGACAGTGTTTGGAGACTATGTTGGATAAAGTTCCTAAGTGCTGTGGAACAAAGGTAAAATGGGCAGTGGTGTCTCCTAGTTGCGGGATGGAGATTGACAATAATAAGTTCTATCAACTGCAAACAGGATCTTCTTCGCCATTGCCAAATCGAGGCAAGCAAGAAGGGGCAAGTAATACCAAAACCTTGATCATCATCTTAGTAAGTGTACTGGTGGCAGTAGCTCTACTAAGTTATTGTGTCTACTACTACTGGAGAAATAATCGGTTAAGTAAAGGTCAATCGCTGTTGAGGACCATTACACCTATATCTTTCCGTGATAATGTTCAAAGACAGGATTCATTAAATGGAGACCTTCCTACAATCCCTTTAACTGTAATTCAACAAAGCACCGATAACTTTTCAGAGTCATATAAACTAGGAGAAGGTGGATTTGGCCCAGTTTACAAGGGTACTTTACCAGATGGCACAGAAGTTGCTGCCAAAAGGCTTTCAGAAACATCGGGTCAAGGTTGCGGGGAGTTCAAAAATGAAGTAAAATTTATAGCTAAACTGCAACACAGAAACCTCGTGAAACTCTTGGGTTGCTGCATTGAGGGAGATGAAAAAATACTGGTATATGAGTACATGCCAAATTCAAGCCTTGACTTACACCTTTTCAataaagaaaaacaaaagcatcTATGTTGGAAATTACGACTAAGCATTATCCATGGAATTGCAAAAGGACTGCTTTACCTTCATGAGGATTCTCGATTTAGAGTAATCCATAGAGATCTGAAAGCCAGCAATGTTCTTCTGGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGGACACTTGAAAAAGGCCAATgtccaacaaaaacaaaaagagttaTTGGCACCTATGGATACATGGCTCCAGAATATGCTATGGCCGGGTTATTTTCAGTAAAATCCGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATAATTTATGGTAAAAGAAATGGCGAATTCGTTCTTTCAGAACATATGCAAAGTCTTCTATTATATACTTGGAAACTCTGGTGTGACGGAAAAAGTTTAGAATTAATCGATCCTTTCCTCAAAAAATCATACGTTGAAAGTGAAGTCTCGAAGTGCATACACATTGGTTTATTGTGCGTTCAAGAAGATGCAGCGGATCGACCAACCATGTCCACCGTTGTTCGCATGCTAGGGAGTGACACAGTAGACCTTCCAAAACCCACGCAACCAGCATTTTCAGTTGGCAGAATGTCCAAGAATGAAGATCAAACTTCAAAAAATTCTAAGGATAATTCTGTTGATGAAGAAACCCTAACTATTGTTTCACCTAGATAG 1998 0.3784 MNTSQQNMTCTKKFLSFILLHIFFLTLTNAQSPFYMVSFCQNSTEKTNITSYRSNVNNVLSWINSNSAAGTVSNQTVVHSSNHDDDVYGYYDCRGDITGSFCQFCLTTAVNDITQRCPNGVTAMIWYDICIVGYANQYFPGKVTLTPSWNLTGSKSVKDSTDLGKAVNYMRYLIGKVTTKANNHWAMGEFNWSDNEKSYAWVQCSRDISKDGCRQCLETMLDKVPKCCGTKVKWAVVSPSCGMEIDNNKFYQLQTGSSSPLPNRGKQEGASNTKTLIIILVSVLVAVALLSYCVYYYWRNNRLSKGQSLLRTITPISFRDNVQRQDSLNGDLPTIPLTVIQQSTDNFSESYKLGEGGFGPVYKGTLPDGTEVAAKRLSETSGQGCGEFKNEVKFIAKLQHRNLVKLLGCCIEGDEKILVYEYMPNSSLDLHLFNKEKQKHLCWKLRLSIIHGIAKGLLYLHEDSRFRVIHRDLKASNVLLDDEMNPKISDFGLARTLEKGQCPTKTKRVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIIYGKRNGEFVLSEHMQSLLLYTWKLWCDGKSLELIDPFLKKSYVESEVSKCIHIGLLCVQEDAADRPTMSTVVRMLGSDTVDLPKPTQPAFSVGRMSKNEDQTSKNSKDNSVDEETLTIVSPR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01489 665 Pfam Salt stress response/antifungal 171 246 IPR002902 -
Tsu08g01489 665 Pfam Salt stress response/antifungal 40 136 IPR002902 -
Tsu08g01489 665 CDD STKc_IRAK 353 618 - -
Tsu08g01489 665 Pfam Protein tyrosine and serine/threonine kinase 351 618 IPR001245 GO:0004672|GO:0006468
Tsu08g01489 665 ProSiteProfiles Protein kinase domain profile. 347 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01489 665 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 25 663 - -
Tsu08g01489 665 Gene3D Transferase(Phosphotransferase) domain 1 423 626 - -
Tsu08g01489 665 PANTHER PROTEIN KINASE DOMAIN 25 663 - -
Tsu08g01489 665 Gene3D Phosphorylase Kinase; domain 1 313 422 - -
Tsu08g01489 665 Gene3D - 149 250 IPR038408 -
Tsu08g01489 665 Gene3D - 34 139 IPR038408 -
Tsu08g01489 665 SMART serkin_6 347 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01489 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Tsu08g01489 665 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Tsu08g01489 665 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Tsu08g01489 665 SUPERFAMILY Protein kinase-like (PK-like) 329 618 IPR011009 -
Tsu08g01489 665 MobiDBLite consensus disorder prediction 625 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01489 Tsu-Chr8 17210193 17213452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01489 9 665 Receptor kinase-like Gene Family AT4G05200 39.650 1.44e-172 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01489 PK_Tyr_Ser-Thr 4.1e-49 CL0016