Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01488 ATGAAGTTTCTTCTTAGCTTCATCCTGCTCCTTCTCTTCCTCTTCACACCAACAAATTCACAATCTCCAAATCCACAATCTCCAATTTCACTATACAAATTCTGCAACAGCTCAACTACAAAACCTCTCACAACTTCTTACAAAACCAACATAAACAAGGTCCTAACATGGATGACCACTATTTCTTTAACAGACCAAGCTAACCAAACCTCCATAGGAAGCAACAATCAAATTGATACAGTTTACGGAAACTATGACTGTCGCGGCGATATAGCTTCAAATGTCTGTCAATTCTGTGTTAGCATTGCTTCCAAAGAAATTTTACAAGGTTGTACAAATGGTATCTCAGCTATTATATTCTATGATATGTGCATACTACGTTACTCAAACATGAATTTCTTTGGAGAAATTCACTTAACTCCATCATTTAATATAACTGGACCAAAGTTCATAAAGGATCCATCAGAGCTTGTGAAAGCTCAGGATTTGTTGAGGAATTTGGCAAGGAAGACTACAAATGATAATCGAATGTGGGCGACAAGCGAGTTTGATTGGAGTAAGAGTGAGAAAAGATATGGTTTGGTTCAGTGTGCTGGAGATCTTAATATTTCTGTGTGTAGAGAGTGTTTGGAGGAATTGATAAATAGGGTTGGTATGTGTTGTGGGAAAAAAGTTATGTGGGCTATTATTGCTCCAAGTTGTGGGATTAGATTTGATGATAAgaatttttaccaaacatgGTCTACTTCTTCGCCAAATCAAGGCAAGCAGGAAGGTTCAAGTAACAAAAAAACCTTAACCATCAGCTTAGTAACTGTACTAATTGTAGTAGTTCTACTAACTTGTGGTGTATACTACTCATGGAGAAGGAATAATAGGTTAAGTCAAGGCGGATTGATGTCGAGGAATATTCCTACAGCTTTTGGACGTGATCATGTTCTAACAGATGATTCATTGAATGGAGACCTCCCAATTATCCCTTTAATTGTGATTCAACAAAGCACTGATTACTTTTCATTGTCTTCTAAATTAGGAGAAGGAGGATTTGGTTCTGTTTACAAGGGTACTTTACCGGATGGAACAGAAATTGCGGCCAAAAGGCTTTCAGAAACATCCGGTCAAGGTTTAGAGGAGTTCAAGAATGAAGTGATTTTCATAGCTAAATTACAACATAGAAACCTTGTGAAACTCTTGGGTTGTTGctttgaagaaaatgaaaagatacTAGTGTATGAGTACATGCCAAATTCCGGCCTCGACTTTCATCTTTTCAATTTGGAAAATCATAATCAACTAGATTGGAATAAACGTCTAAACATTATAAATGGAATCGCAAGAGGACTGTTATACCTTCACGAGGATTCTCGACTTAGAGTTATTCATAGAGATTTGAAAGCTAGCAATGTTCTTTTGGACGATGAAATGAATCCAAAGATATCAGATTTCGGATTGGCAAGAAGGTTCGAAAAAGGCCAAAGTCAGACAGAAACAAAAAGAGTTATGGGAACCTACGGTTACATGGCTCCAGAATATGCTATGGCTGGATTGTTTTCGGTAAAATCTGATGTTTTCAGCTTTGGAGTGCTCGTATTGGAAATCGTTTATGGAAAAAGGAATGGTGAATTCTTCTTTTCAGAACATGGGCAAAGTCTTCTCTTATATATTTGGAAACTCTGGTGTGAAGGAAAAAGTTGGGAATTTGTCGAGCCGATCCAAAGAAAAACATACATCGAAAGCGAAGTTCTAAAGTGCGTACACATTGGTTTATTGTGCGTGCAAGAAGATGCTGCAGATCGACCAACTATGTCCACTGTTGTTCTCATGCTAGGGAGCGACATGATGGTCCTTCCAAAACCCGAAAGACCAGCATTTTCTGTCGGAAGACTCCCCAATGAAGATTCAACTTCAAAAAGTTATAACGATAACTCGATTAATGAACTTACGGTAACTAGTTTTACTCCTAGATAG 1968 0.3714 MKFLLSFILLLLFLFTPTNSQSPNPQSPISLYKFCNSSTTKPLTTSYKTNINKVLTWMTTISLTDQANQTSIGSNNQIDTVYGNYDCRGDIASNVCQFCVSIASKEILQGCTNGISAIIFYDMCILRYSNMNFFGEIHLTPSFNITGPKFIKDPSELVKAQDLLRNLARKTTNDNRMWATSEFDWSKSEKRYGLVQCAGDLNISVCRECLEELINRVGMCCGKKVMWAIIAPSCGIRFDDKNFYQTWSTSSPNQGKQEGSSNKKTLTISLVTVLIVVVLLTCGVYYSWRRNNRLSQGGLMSRNIPTAFGRDHVLTDDSLNGDLPIIPLIVIQQSTDYFSLSSKLGEGGFGSVYKGTLPDGTEIAAKRLSETSGQGLEEFKNEVIFIAKLQHRNLVKLLGCCFEENEKILVYEYMPNSGLDFHLFNLENHNQLDWNKRLNIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARRFEKGQSQTETKRVMGTYGYMAPEYAMAGLFSVKSDVFSFGVLVLEIVYGKRNGEFFFSEHGQSLLLYIWKLWCEGKSWEFVEPIQRKTYIESEVLKCVHIGLLCVQEDAADRPTMSTVVLMLGSDMMVLPKPERPAFSVGRLPNEDSTSKSYNDNSINELTVTSFTPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01488 655 Gene3D - 29 133 IPR038408 -
Tsu08g01488 655 Gene3D - 152 243 IPR038408 -
Tsu08g01488 655 CDD STKc_IRAK 344 609 - -
Tsu08g01488 655 Gene3D Transferase(Phosphotransferase) domain 1 414 615 - -
Tsu08g01488 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Tsu08g01488 655 Gene3D Phosphorylase Kinase; domain 1 309 413 - -
Tsu08g01488 655 ProSiteProfiles Gnk2-homologous domain profile. 28 133 IPR002902 -
Tsu08g01488 655 ProSiteProfiles Protein kinase domain profile. 338 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01488 655 SUPERFAMILY Protein kinase-like (PK-like) 322 636 IPR011009 -
Tsu08g01488 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 652 - -
Tsu08g01488 655 Pfam Protein tyrosine and serine/threonine kinase 339 607 IPR001245 GO:0004672|GO:0006468
Tsu08g01488 655 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Tsu08g01488 655 PANTHER PROTEIN KINASE DOMAIN 20 652 - -
Tsu08g01488 655 ProSiteProfiles Gnk2-homologous domain profile. 138 243 IPR002902 -
Tsu08g01488 655 Pfam Domain of unknown function (DUF3403) 611 655 IPR021820 GO:0004674
Tsu08g01488 655 SMART serkin_6 338 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01488 655 Pfam Salt stress response/antifungal 160 240 IPR002902 -
Tsu08g01488 655 Pfam Salt stress response/antifungal 35 130 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01488 Tsu-Chr8 17153948 17158004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01488 3 655 Receptor kinase-like Gene Family AT4G05200 40.173 5.39e-167 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01488 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01488 08 17153948 17158004 Tsu08g01488 08 17153948 17158004 ECH
Tsu08g01488 08 17153948 17158004 Tsu03g00188 03 1523733 1530290 PCT