Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01487 ATGACATATATGAAATTTCTTAGCTTCATGTTcctccttctttttcttgtctTCCACTTCACACAAACAAGTGCACAAGTTCCAATTTACTTGTACAACTTTTGTGAAAACTCAACTGCAAAATCGCTAACCACTTCATACAAATCCAACGTAAACAACTTCGTTTCATGGATAGCCTCCGATTCTGCCAAAGGAACAACATTTAACAACATCACCATAGGCAGCAGTAGCAACAGCAATACTGGTGATGATGTTTATGGAAACTACGATTGCCGGTTTGACATTTCAGAAAGTTTCTGCCAATTCTGTGTCAACACTGCTGCAAGAGATCTTGTTCAACATTGTCCAAACAGCCTCACATCTGTTATATTTTATGATGTATGTATTATCCGTTACTCTAACGAGAATTTCTTTGGAAAAGTTTCTACAACACCAACATGGAATGTTACTGGAACCAAAAAAACTAAGGACTCAAGTGATCTTACAAAAGTAGAGGGTTACGTAAGGATTTTGATAAGAAAAATGACTATAGAGACGAACCAATCATGGGCAATGGGTGagtttaatttgagtaatacgGAGAAAAGGTATGGTTTTGCTCAGTGCGGTAGAGACCTGGATAATGACGGGTGCAGACAGTGTTTGGAGGCTATGCTGGACATAGTTCCCAAGTGTTGTGGGAATGAGGTGTCATGGGAAGTTGTGGCTCCAAGTTGTGGGATCAAATTTGATGATCAAAAGTTCTTCATGTTAAATGGCCAAACAGGATCATCTTCTAAACCAAATCCAGCCAATCAAGAAGATTCTAGTAACAAAAAAACCTTGGTTATCGCCTTAATAAGCGCGCTGGTGGCAGTAGCCCTTCTATGTTGCTGTATCTACTACTACTGGAGAAAGAACGGGTTCTGTAAAGGTGGATTTCTGTTGAGGAGCACTACTCCTGTAGCTTTTAATGATAATGTCCAAAGAGATGATACATTGAATGGAGACCTTCCTATGATCCCTTTTACTGTAGTTCAACAAGCCACTAATTACTTTTCATTATCATCTAAGTTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTACTTTACCTGATGGGACAGAAATTGCAGTCAAAAGGCTTGCAGATACGTCTGATCAAGGTTCCGAGGAGTTCAAGAATGAAGTGATCTTCATAGCTAAACTGCAACATAGAAATCTTGTGAAACTATTAGGTTGCTGCATTGAAGATGGCGAAAAGATACTAGTATATGAGTACATGCCAAATTCAAGCCTTGACTTTCACCTTTTCAatgaagaaaaaaataagcaaCTAGATTGGACATTACGACTAAGTATTATCAATGGAATCGCAAGAGGATTGTTATACCTTCACCAAGATTCTCGACTTAGAGTTATCCATAGAGATCTGAAAGCCAGCAATGTTCTTCTTGATGATGAAATGATGCCAAAAATATCAGATTTTGGATTGGCAAGGAAATTCGAAAAAGGCCAAAGtcagacaaaaacaaaaagagttaTTGGCACCTACGGATACATGGCTCCAGAATATGCTATGGCTGGATTATTTTCAGTAAAATCTGATGTATTCAGCTTTGGAGTTCTTTTATTAGAAATTGTTTACGGAAAAAGGAATGGTCAATTCATTCAATCAGAACATAGGCAAGGTCTTCTATTATATACTTGGAAACTTTGGTGCGAAGGGAAAAATTTGGAATCAATTGATCCAATCCTCAAAGAATCATACATTGAAAGTGAGGTTATGAAGTGCATACACATTGGTTTATTGTGTGTACAACAAGATGCCGCAGATCGTCCAACCATGTCCACCGTTGTTCTGATGTTAGGCAGTGACACAATGCCCCTTCCGAAACCCAAGCAACCGGCATTTTCAGTTGGAAGAATGTCCGAAGAAGATCCAAGTTTAAATAGTTCTAAGGATGATGTTGATGAATCGATAGCATGCTATAGCAGCATAGTGGAGCGGATGCTCACCGCAATGGGATGGCTGGGAGCGGAGCAGTTAACCATAGCAGCCGCTCCAGCTGGGATAGCGGTTGCAGAGTGCTGGAGGCTTCTTTGGAATAGGTGTGGAGCAATAAGACAAAGGTTGACATTAGCTGTCACAGAGTGGTGGAAGATGAATGGAGCAGAGGTTCTACATTTGCAACTATTGGCGATTAAAGTATTGAGTTTGACTTGCAACGTTTCAGGATGTATGGTGGATCATGGTGCGGAAAGGTACCTGCAAGACATGCTAGCACTCCACGCTCAAGTCAGTATGAATGAGATCAAAGAGGAGTGA 2310 0.39 MTYMKFLSFMFLLLFLVFHFTQTSAQVPIYLYNFCENSTAKSLTTSYKSNVNNFVSWIASDSAKGTTFNNITIGSSSNSNTGDDVYGNYDCRFDISESFCQFCVNTAARDLVQHCPNSLTSVIFYDVCIIRYSNENFFGKVSTTPTWNVTGTKKTKDSSDLTKVEGYVRILIRKMTIETNQSWAMGEFNLSNTEKRYGFAQCGRDLDNDGCRQCLEAMLDIVPKCCGNEVSWEVVAPSCGIKFDDQKFFMLNGQTGSSSKPNPANQEDSSNKKTLVIALISALVAVALLCCCIYYYWRKNGFCKGGFLLRSTTPVAFNDNVQRDDTLNGDLPMIPFTVVQQATNYFSLSSKLGEGGFGPVYKGTLPDGTEIAVKRLADTSDQGSEEFKNEVIFIAKLQHRNLVKLLGCCIEDGEKILVYEYMPNSSLDFHLFNEEKNKQLDWTLRLSIINGIARGLLYLHQDSRLRVIHRDLKASNVLLDDEMMPKISDFGLARKFEKGQSQTKTKRVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIVYGKRNGQFIQSEHRQGLLLYTWKLWCEGKNLESIDPILKESYIESEVMKCIHIGLLCVQQDAADRPTMSTVVLMLGSDTMPLPKPKQPAFSVGRMSEEDPSLNSSKDDVDESIACYSSIVERMLTAMGWLGAEQLTIAAAPAGIAVAECWRLLWNRCGAIRQRLTLAVTEWWKMNGAEVLHLQLLAIKVLSLTCNVSGCMVDHGAERYLQDMLALHAQVSMNEIKEE 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01487 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Tsu08g01487 769 Gene3D - 28 137 IPR038408 -
Tsu08g01487 769 Gene3D - 147 248 IPR038408 -
Tsu08g01487 769 Pfam Protein tyrosine and serine/threonine kinase 347 615 IPR001245 GO:0004672|GO:0006468
Tsu08g01487 769 Gene3D Transferase(Phosphotransferase) domain 1 422 623 - -
Tsu08g01487 769 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Tsu08g01487 769 Pfam Salt stress response/antifungal 35 134 IPR002902 -
Tsu08g01487 769 Pfam Salt stress response/antifungal 169 245 IPR002902 -
Tsu08g01487 769 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 646 - -
Tsu08g01487 769 SMART serkin_6 346 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01487 769 CDD STKc_IRAK 352 617 - -
Tsu08g01487 769 PANTHER PROTEIN KINASE DOMAIN 20 646 - -
Tsu08g01487 769 ProSiteProfiles Gnk2-homologous domain profile. 29 137 IPR002902 -
Tsu08g01487 769 ProSiteProfiles Protein kinase domain profile. 346 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01487 769 MobiDBLite consensus disorder prediction 629 648 - -
Tsu08g01487 769 Gene3D Phosphorylase Kinase; domain 1 313 421 - -
Tsu08g01487 769 SUPERFAMILY Protein kinase-like (PK-like) 331 644 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01487 Tsu-Chr8 17141357 17147344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01487 6 650 Receptor kinase-like Gene Family AT4G05200 39.970 4.63e-168 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01487 PK_Tyr_Ser-Thr 1.3e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00191 03 1542105 1547315 Tsu08g01487 08 17141357 17147344 PCT