Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01486 ATGGAAGGAAGAAAACTAAATTTGACATTAATATGTTTTGCTTTCCTACTATATCTAAGCTTCAAACAAATCATTACCAAAGCTCAATTATCACCCACTTATGTGGGAGATGACTGTAATTACTCAAGAGAACAGCCTCTTAACAATGCATACCAAAAAAATCTCAATGGCATGCTCTCATATTTATCTAATGATTCAGCCACAAGCAAAGGTTATAACTATACCAGAATAGGGGACAACACAACCAAAGGTGATGCAGTGTATGGTCTCTATGATTGCCGCGGCGATATTGTTGGATACTTTTGTGAATTTTGTGTCTCTTCTGCTTCCAGAGAAGTTCTTGGGCGCTGCCCGAATAGAGTCTCTGCTACTATATTTTATAGCTTTTGCATTTTTAGGTACTCAAATGAGAACTTCTTTGGGAAAGTCACAACAGACCCTTCATGGCAACATTTAGGAACCAAAAATGTCTCTAGTTCGATAGAGATTCAGAAAGGTGATGATTTTATGAAAAGTTTGATAAGAAAAGCAACTATTGAGACCAACCAATTGTACTATATGGATGGTTTCAATTTGAGTTCCACTGAGAGTAGGTACGGACTGGTTCAATGCAGTAGAGATCTTACAAATGAAAGGTGCAGACAGTGTTTGGAGTTTATGTTAGCAAAGGTTCGCACATGTTGTGAACATAAGTTGGGATGGCAGGTTTCATCTGCTAGCTGTCTGATTAGGTATGATGATAATATGTTCTATCTTCACAATCAATCACCTTCGGTACTTGTGCCTGATCCACAAACAGCAAACAAGAAGAGTACTAGTAAGTCAAGAAAGTTGATCATTGGCTTTAGTGTTCTGGGTGTAGTAATTCTACTATGTTCCACTCTATATTGCTTCTGGTACAAGAAAAGAGTTAGAAAAGATTGGCAGACACCTGCATATGAGGAAACACTTAATGCAGACCTGCCTACAATTCCATTGATCACAATTCAACATTGTACTGATAACTTTTCAGAAACATCTAAATTAGGACAAGGTGGATTTGGATCTGTTTACAAGGGAATTCTGCCAGATGGAAGACAAATAGCAGTAAAAAGGCTGTCAAGAAATTCTGGTCAAGGCTCAGAGGAGTTCAAGAATGAAGTGATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAGGCTTTTGGCATGCTGCTTGGAAGGAAATGAAAAGCTACTTGTGTATGAGTTTATGCCAAATGCCAGTCTCGACTTTCACCTGTTTGatgatgaaaaaataaaggaaCTCAATTGGAAACTAAGCTTAAGCATTATCAATGGAATAGCAAAAGGTCTTTTATACCTCCATGAGGACTCTAGACTAAGGGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGATCATGAAATGAATCCCAAAATATCAGATTTTGGAATGGCAAGGGCATTTGAAATAGGCCAGAACCAGGCGAATACAAGACGAATAATGGGCACCTATGGATACATGGCACCCGAGTACGCAATGGAAGGAGTATTTTCTGTGAAATCTGATGTATTCAGCTTTGGAGTACTAGTTTTAGAAATCATTAGTGGGAAAAAGAATACCGGATTCTATCTGTCAGAACATGGTCAAAGTCTTCTTTTATATACATGGAAAAAATGGTGTGAAGGAAACTGTTTGGATATTATGCATTCCGTACTTGCAAAAACTTGTATAGACAATGAAGTTGTGCGGTGCATAAACATTGGTCTATTGTGTGTTCAACAAGATGCGGCAGATAGACCAACCATGTCAACTGTTGTTGTAATGTTGGCTAGTGACACAATGACCGTTCCGAAACCCAAACAACCTGCATTTTCAATTGGAAGAATTACCTCCGAGGATAGTTCTACCTCAAAAAGTTCCAACGCTCCTTCCATTAATGATGTAACAGTCTCAAACATTATACCAAGGTAA 1965 0.3776 MEGRKLNLTLICFAFLLYLSFKQIITKAQLSPTYVGDDCNYSREQPLNNAYQKNLNGMLSYLSNDSATSKGYNYTRIGDNTTKGDAVYGLYDCRGDIVGYFCEFCVSSASREVLGRCPNRVSATIFYSFCIFRYSNENFFGKVTTDPSWQHLGTKNVSSSIEIQKGDDFMKSLIRKATIETNQLYYMDGFNLSSTESRYGLVQCSRDLTNERCRQCLEFMLAKVRTCCEHKLGWQVSSASCLIRYDDNMFYLHNQSPSVLVPDPQTANKKSTSKSRKLIIGFSVLGVVILLCSTLYCFWYKKRVRKDWQTPAYEETLNADLPTIPLITIQHCTDNFSETSKLGQGGFGSVYKGILPDGRQIAVKRLSRNSGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEGNEKLLVYEFMPNASLDFHLFDDEKIKELNWKLSLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGMARAFEIGQNQANTRRIMGTYGYMAPEYAMEGVFSVKSDVFSFGVLVLEIISGKKNTGFYLSEHGQSLLLYTWKKWCEGNCLDIMHSVLAKTCIDNEVVRCINIGLLCVQQDAADRPTMSTVVVMLASDTMTVPKPKQPAFSIGRITSEDSSTSKSSNAPSINDVTVSNIIPR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01486 654 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Tsu08g01486 654 Gene3D Transferase(Phosphotransferase) domain 1 412 619 - -
Tsu08g01486 654 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Tsu08g01486 654 Pfam Domain of unknown function (DUF3403) 609 654 IPR021820 GO:0004674
Tsu08g01486 654 Gene3D - 33 139 IPR038408 -
Tsu08g01486 654 Gene3D - 150 250 IPR038408 -
Tsu08g01486 654 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Tsu08g01486 654 Pfam Salt stress response/antifungal 39 136 IPR002902 -
Tsu08g01486 654 Pfam Salt stress response/antifungal 168 247 IPR002902 -
Tsu08g01486 654 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 652 - -
Tsu08g01486 654 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 23 652 - -
Tsu08g01486 654 CDD STKc_IRAK 342 607 - -
Tsu08g01486 654 SMART serkin_6 336 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01486 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Tsu08g01486 654 Gene3D Phosphorylase Kinase; domain 1 298 411 - -
Tsu08g01486 654 Pfam Protein tyrosine and serine/threonine kinase 339 606 IPR001245 GO:0004672|GO:0006468
Tsu08g01486 654 SUPERFAMILY Protein kinase-like (PK-like) 315 607 IPR011009 -
Tsu08g01486 654 ProSiteProfiles Protein kinase domain profile. 336 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01486 Tsu-Chr8 17136260 17140177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01486 13 654 Receptor kinase-like Gene Family AT4G05200 40.353 1.07e-167 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01486 PK_Tyr_Ser-Thr 1.6e-47 CL0016