Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01479 ATGTCTCCATCAATGAAATCAAAATCCAAGTCCAAGGATAAGACTTCTGCAAAGGCTGTTAAGGAACAACACAAGACTTCTCCAAAGAATTCCGGATCTACTAATGATGAGAATGGCATTCCTGCTAGTGTGTGTGATCCTATCACGGAAACAGTTCAAACTCTAGAAACATCGTTGGCTGATTCTTtcgcaaaaataaatgacacagaTGATCATTCTAGTAGTCCTCAGGGAACAGTGTCTGAGTACGATTCAGTTTCTAATAACGGAAGCTGTTCTGGTGAATCAGAAGACACTAAAGAGAAAGCTGCAAGCTCCTCTACGCGGTTGGATATTATACCTGGTTGTGATAATGACAGAAGGGATAAGATCCGACTGAAAAATGAGAGGAAGCATCAGAGGCAGAGGGAAAGGAGAGCTCATGAATTGCACGAGCGATGTGGTATGTATCTTATGTCGAGGAAGCTAGAAAAACTTTCAGAGAAGTTAGTGGCAATGGGATTTTCTTCTGAGCAAGCAACATTAGCTTTGAAGTTAAATGAAGGCAAATTAGAAGAATCAATATCTTGGTTGTTTGACGGAAGCGAAGCGAAAGATACTACCAAGCTTGCAAGTGAAAGTAATTTGAAAATTGACATAAGTGAAGAGCTTCAACAAATTTATGCTATGGAAGTAAAGTACAATTGTTCAAAGCAAGAAGTTGAAAGAGTAGTTGTTGCCTGTGAAGGTGATCTTCAAAAGGCAGATGACACATTAAAATCTCAGAAGCAAGAATCTCCTGTGAATCAGTCAGAAGATTCTGCTCAAAATAATAGTTTGATGAGAAATCATGGATTACAACCAGCTTCGGTTTCAATACAGCAGAGAGGGAATGAAAGTGATTTCAACTATTACAATGTATGTGGTGCTGATTCCATGTTTCAAGATCCTGAAAATAGGAATCCACAGTCTTTACACATGAATCATCAAAATGAACCGACACAGAAAAGATGGGGTGTTAGTGTTACAGCATCAAATCCTTCTAATATGTTACAATCCATGCAAGCAATGTCACCATATGTTAACATGGAGGCACAGCCGAGTGCTGCCTTTAGGAACGAAGGAAGAATGATTCATCAAGGAGTAGGAAGAGAACCGGTAGTCATGATGCAACATCCTCAATTTGCCGATGCCAAACAAAATTATCTGAATTCTATGAATGCCGCCATACCTTCAGCAACATCTGGTTGGTATGTAAACAATGTTCCGGCGTATGAAAATACAAGGTTGAATGGGAATTTACTACTACAAAATCACGGTATGGGAACTGCGGGCACAGATCGCTTGCAGCAACTTTGTCAAGCTCCTTATAAAGAATATTCGCATGGATTTGGGCCGGTAGACTCATCAATCTCATCAGGTGGAATGGGAGGTTTCTATAAACCGATGGCATCGTTGCCTTCACCTGCAATGCCTTCTCACTCTCAACATCATGGTTCATGGAACACTGCCGCATCATCACCTTCACTTACAGTTCCACCTTCACTTGGATTATTTTGTGGTCATCAGAATCCATCAGCCAGATCATTCAGCTCACATTCGCATGTGGATTGGAATACCGGGGGCATGGTGCAAGAATTCGACTACAACAATATAGATTGGAGTTTGGATTGCCCGTCGTCATCCAGATCAGGTGATGTTTGGCTAGGGTTCTCATCGTCATTGAGAAACAGTGCCGGGAATAGGATGGCCAGTTCTTACATGACAGGATCACGAAATGTTGGCACAGCGAGGGAAACTTCGTCGTCTGCTGGCTTGCGAGATTGGACCTCGCCGTTTGCTGGGAAGGACATATTCAGTGTTCCTAGGAAGATTGTTACCTTTCCTCCTATGTAG 1875 0.4144 MSPSMKSKSKSKDKTSAKAVKEQHKTSPKNSGSTNDENGIPASVCDPITETVQTLETSLADSFAKINDTDDHSSSPQGTVSEYDSVSNNGSCSGESEDTKEKAASSSTRLDIIPGCDNDRRDKIRLKNERKHQRQRERRAHELHERCGMYLMSRKLEKLSEKLVAMGFSSEQATLALKLNEGKLEESISWLFDGSEAKDTTKLASESNLKIDISEELQQIYAMEVKYNCSKQEVERVVVACEGDLQKADDTLKSQKQESPVNQSEDSAQNNSLMRNHGLQPASVSIQQRGNESDFNYYNVCGADSMFQDPENRNPQSLHMNHQNEPTQKRWGVSVTASNPSNMLQSMQAMSPYVNMEAQPSAAFRNEGRMIHQGVGREPVVMMQHPQFADAKQNYLNSMNAAIPSATSGWYVNNVPAYENTRLNGNLLLQNHGMGTAGTDRLQQLCQAPYKEYSHGFGPVDSSISSGGMGGFYKPMASLPSPAMPSHSQHHGSWNTAASSPSLTVPPSLGLFCGHQNPSARSFSSHSHVDWNTGGMVQEFDYNNIDWSLDCPSSSRSGDVWLGFSSSLRNSAGNRMASSYMTGSRNVGTARETSSSAGLRDWTSPFAGKDIFSVPRKIVTFPPM 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01479 624 MobiDBLite consensus disorder prediction 307 329 - -
Tsu08g01479 624 MobiDBLite consensus disorder prediction 7 25 - -
Tsu08g01479 624 SUPERFAMILY UBA-like 158 196 IPR009060 GO:0005515
Tsu08g01479 624 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 154 194 IPR015940 -
Tsu08g01479 624 PANTHER UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN 1 624 - -
Tsu08g01479 624 SMART uba_6 156 193 IPR015940 -
Tsu08g01479 624 MobiDBLite consensus disorder prediction 309 329 - -
Tsu08g01479 624 MobiDBLite consensus disorder prediction 63 94 - -
Tsu08g01479 624 MobiDBLite consensus disorder prediction 250 273 - -
Tsu08g01479 624 MobiDBLite consensus disorder prediction 63 141 - -
Tsu08g01479 624 Gene3D - 121 208 - -
Tsu08g01479 624 MobiDBLite consensus disorder prediction 255 273 - -
Tsu08g01479 624 MobiDBLite consensus disorder prediction 1 49 - -
Tsu08g01479 624 MobiDBLite consensus disorder prediction 26 40 - -
Tsu08g01479 624 PANTHER DOMAIN PROTEIN, PUTATIVE-RELATED 1 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01479 Tsu-Chr8 17104548 17107894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01479 7 414 EF-hand Containing Proteins AT5G12120 37.939 7.16e-70 236