Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01477 ATGAAGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATTATGCAAGCTGATGAAGATGTTGGAAAGATAGCATTAGCTGTGCCTGTTTTAGTTTCTAAAGCTCTGGAGCTATTTCTGCAAGATCTTTGTGATCGTACTTATGAAATAACTCTTCAAAGAGGAGCGAAAACCATGAACTCGTTGCATTTAAAACATTGTGTACAAAGCTATAATGTTTTTGACTTTCTGAAGGATGTAGTCAGCAAGGTTCCTGACTACGGCCATGGTCATGGTCATTCTGATGCTGGTGCTGATGATCAGACCATTTCAAAAAGAAGGAAAGCTGCAGGTGATGATGGTAATGAAAGCGATGAAGAAGCTAAGAGGGGCAAAAtgcTTGAATTGGGCCACACTAGCCCGACTGGTAGAGGAAGAGGCCGAGGTAGAGGTAGAGGGCGTGGTCGAGGTCGAGGACGGGCTATACCAAGGGAGGGACATCATCAGGACACTGAGTCTGAGCCTTGTCCTTCTGTTCAGCAAGTTAGCCAACTTACTACAGATACAAATGTGGCTATACTTGATGGTTCAGAGTCAAATGAGTTATCAAAGACGAGTGTTGTTATTCTTCCTGTTGATAACTCCGACTCACTCCTTAATATTGATCTGAATGCCAATATGAACGAAAGTGATGACAAAAAGGCTAGTGCAGTTGCTAATCTCACACCAGCTGATCCTGAACCTGCTAATCCCTCCTTGTCTGAACCTCCTCCAACAGACATCAAGCATCATGAAGAAATTCCGGGCTGGTCCCTTTCTGAGGTGGACAAGATGGCCATTGATTCAATGCAGCTTGCACAGCTAGGTACGCGAATggatgaggatgatgaagatTATGACGAGGAAGGGTAA 900 0.4333 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYGHGHGHSDAGADDQTISKRRKAAGDDGNESDEEAKRGKMLELGHTSPTGRGRGRGRGRGRGRGRGRAIPREGHHQDTESEPCPSVQQVSQLTTDTNVAILDGSESNELSKTSVVILPVDNSDSLLNIDLNANMNESDDKKASAVANLTPADPEPANPSLSEPPPTDIKHHEEIPGWSLSEVDKMAIDSMQLAQLGTRMDEDDEDYDEEG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01477 299 PANTHER HISTONE SUPERFAMILY PROTEIN 1 298 - -
Tsu08g01477 299 SUPERFAMILY Histone-fold 3 94 IPR009072 GO:0046982
Tsu08g01477 299 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Tsu08g01477 299 MobiDBLite consensus disorder prediction 91 130 - -
Tsu08g01477 299 MobiDBLite consensus disorder prediction 91 178 - -
Tsu08g01477 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 298 - -
Tsu08g01477 299 MobiDBLite consensus disorder prediction 237 261 - -
Tsu08g01477 299 MobiDBLite consensus disorder prediction 154 168 - -
Tsu08g01477 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01477 Tsu-Chr8 17075979 17079641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01477 1 288 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.344 5.91e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu08g01477 CBFD_NFYB_HMF 2.3e-19 CL0012