Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01473 atggcaATTGAAAAATCAAACTCCTATGAGAATTGTAAACACTATATGGCTATGATATGTTTACAATTTGGCTATGCTGGTATGAATATTATCACTAAGGTTTCACTGAACCAAGGAATGAGCCACTATGTCCTCGTCGTTTATCGTCACGCTTTCGCAACTGCTTGCATAGCTCCATttgcattttttcttgaaaGGAAAGGTCAACCAAAGATAACATTCCGAATTTTCATGCAAATTTTCATCCTAGCTCTTCTCGGGCCAGTGATTGATCAAAATTTCTATTATGCTGGGTTGAAGCTCACATCACCAACTTTTTCTTGTGCAATGAGTAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTTATATGCAggatggagaaaataaacataaagcaagTAAGGTGTCAAGCAAAGATATTTGGAACAATATTAACAGTAGCTGGTGCAATGCTAATGACATTATACAAAGGTCCTATTGTGGAGATGTTTTGGGCCAAACATAGAAATCCTCAAAATGAAACTCATGAAACAACCACCACAGGATCTTCTGAAAAAGATTGGATTTTAGGTTGCACTTTCCTTATCCTTGCCACATTTGCTTGGGCTTGTCTCTTTGTTTTGCAAGCAAAGGTTATAGAGACGTACAAGCATCATCAGCTAAGTCTAACTTCACTTATGGTCTTCATTGGTACTCTTCAAGCTATTGCTGTTACTTTGGTGGCTGAGCATAATCTTTCTGTTTGGAGGATTGGTTGGGATATGAGTTTACTTGCTGCTGCTTATGCTGGAATTGTGACCTCAAGCTTAGCATACTATGTGCAAGGGCTGGTGATTAGGAAGAAAGGGCCTGTCTTTGCAACTGCCTTTAGCCCACTTATGATGATCATTGTTGCTGTCATGGGCTCCTTTATCCTTGCAGAACAGATTTATTTTGGAGGTGTGATGGGTGCCATCTTGATTGTGATAGGCTTATATTCTGTTCTATGGGGAAAGCACAaggaagaaatagagagaaaagTAGATGATATTCCTTTGCCTATAAAGGGTACTCAAATAAGTGGAAATTCAGGGCCAGTGATTGATGACACAGATCAAGTAAAACAACATGGTCAAGTTGGAGATACTAACAACATGCTTTCTTCACTTGCAATAACTATTCCTACTAGAGAGCCTACTAATAATAATGTTAACCAACAATAA 1206 0.3673 MAIEKSNSYENCKHYMAMICLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATACIAPFAFFLERKGQPKITFRIFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFVMAVICRMEKINIKQVRCQAKIFGTILTVAGAMLMTLYKGPIVEMFWAKHRNPQNETHETTTTGSSEKDWILGCTFLILATFAWACLFVLQAKVIETYKHHQLSLTSLMVFIGTLQAIAVTLVAEHNLSVWRIGWDMSLLAAAYAGIVTSSLAYYVQGLVIRKKGPVFATAFSPLMMIIVAVMGSFILAEQIYFGGVMGAILIVIGLYSVLWGKHKEEIERKVDDIPLPIKGTQISGNSGPVIDDTDQVKQHGQVGDTNNMLSSLAITIPTREPTNNNVNQQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01473 401 Pfam EamA-like transporter family 16 155 IPR000620 GO:0016020|GO:0016021
Tsu08g01473 401 Pfam EamA-like transporter family 191 330 IPR000620 GO:0016020|GO:0016021
Tsu08g01473 401 PANTHER WAT1-RELATED PROTEIN 9 369 - -
Tsu08g01473 401 PANTHER WAT1-RELATED PROTEIN 9 369 IPR030184 GO:0016021|GO:0022857
Tsu08g01473 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 335 - -
Tsu08g01473 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01473 Tsu-Chr8 17009962 17013558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01473 1 392 Nodulin-like Gene Family AT5G07050 64.250 1.10e-179 504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00223 03 1771718 1776804 Tsu08g01473 08 17009962 17013558 PCT