Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01436 ATGAGTCCTCCAGCTGAATTGGAGATGGAAGATACTAAGTCCTTTGTTTCAATGGTCGATAATGGTGACCAAGCTGAGTCTCGGTTTGCTGAATTCTCCAAGAATGAGCTAGCATTGGATGAGAAAAGCTGTAATGAAGCAATGGAACTGTTCGGAGAAACAAAACATCTTCTCATGGCAAATGTTTCATCAATCGGGAATGGAACGgCAGAAGAAGCAGAGCGGTACTggtttgcttttattttatattctataaaGAGACTGGTTCAGAAAAATGAGGAGAGTGGAAAGGAAGAGACTGAGAATACTGGTCTTACCTTGTGTCGAATATTGAGAGCAGCAAAGCTTAATgttccagatttttttaaagaacttCCTCAGTTTGTTGTTAAGGCTGGTCCAATTTTAAGCAATCTATATGGCTCGGATTGGGAAAACAGGCTTGAGGCAAAGGAGATGCAAGCTAACACCATTCACTTGAAGGCTCTTAGCAAGTATTATAAGCGTGTTTTTGAAGAGTTCTTTGTGTCAACTGATACAAATGTCGAAAATAACTCATCTGTTACCACCGATCATGTATCTGAGTACCACCGTTTTGGATGGTTACTTTTCTTGGCGCTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCCATCTTGGCTATCCTAATTATTCATGTTCCGGCTCGTTTCCGGAATTTCAACATTCATGACTCTTCGCGATTTGTTAAGAAAAATAGCAAAGGTGTGGACCTCCTTGCTTCACTTTGCAacatatataacacttcagaagATGAGTTGAGGAAAACCATGGAGCAAGCCAATAATTTAGTAGCTGATATATTGAAGAAGAAACCCTGTTTGGCATCTGAATGCCAAACTGAAAACCTAGAgaattttgaaaaagATGGTTTAACCTATTTTAAAGATCTGATGGAGGAATCATCTCTGCCATCTAGTTTGAATGTCTTAGAAAAAGATTATGATCACATGACTCGCAACAAGGGTGAACTTGATGAAAGGTTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAAGCTTAGGAAGTTTTTCTGGAGGTTCTGTTTCAACAGGAGGTGGAAAGAGGAAATTTGATATGATGACATCACCTGCTAAGACCATTGCAAGTCCACTTTCACCCTACCGCTCTCCTGCTTCCCATGCTAATGGCATTCCGGGTAGCGTAAATTCAAAGATTGCTGCCACCCCTGTAAGCACAGCAATGACGACTGCAAAGTGGCTCCGCACTGTCATTTCTCCACTCCCATCAAAGCCCTCGCAAGAGCTAGAGCGATTCTTGACATCATGTGACAAGGATATTACAAGTGATGTAGTACGCAGAGCACAGATTATATTGCAAGCTATATTTCCTAGTAGTCCCCTTGGGGACCGATGTGTAACTGGGATCCTGCAAAGTGCTAACCTCATGGACAATATATGGGCAGAACAACGAAGATTAGAAGCGATGAAGTTCTACTATAGGGTATTGGCAACAATGTGCAGAGCAGAAGCTcaaatacttggcaacaatttAACTCCACTGCTTACTAATGAGAGGTTCCATAGGTGTATGCTTGCATGCTCTGCAGAATTAGTCCTGGCTACTCACAAGACTGTGACAATGTTGTTCCCTGCTGTACTGGAGAGGACTGGAATCACAGCTTTTGATCTTAGCAAGGTGATCGAAAGTTTCATTAGACATGAGGAATCTCTCCCGAGAGAGCTGAGGCGACATCTTAATTCATTGGAGGAACGACTTTTGGAGAGCTTGGTATGGGAAAAGGGTTCTTCAATGTATAATTCATTAGCAGTCGCTAGACCTGCCCTTTCTGCAGAAATCAATCGACTTGGCCTGTTAGCCGAACCAATGCCATCATTAGATGAAATTGCAATGCAGATTAACTTCTCTTGTGGAGGACTGCCTCCTGTGCCTTCCTTGCCTAAGCCTGAGACTTTGCCAGCTCAAAATGGGGACCCCAGATCACCAAAGCGGCTCTGTACAGAATATCGAAATGTGTTGGTGGAACGAAATTCTTTTACTTCACCGGTGAAAGAACGGCTTCTTCACTTAAGCAACCTTAAGTCAAAACTACTTCCACCTCCTTTGCAATCAGCATTTGCCAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATAAGCGTATTTTTCAGCAAGATTGTTAAGTTGGGAGCTGTCAGAATAAGTGGAATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAATCAATGGACATCTCTCTTCTTCAACCGTCATATTGACCAAATAATTTTGTGTTGCTTCTATGGAGTTGCAaagATTTCACAACTGAACCTAACTTTTAGGGAGATTATATGCAACTATAGGAAGCAACCGCAATGCAAGCCACAGGTTTTTCGTAGTGTATTTGTTGACTGGTCCTTGGCGCGCCGTAATGGGTCATCTAGACAAAGAACAGGGCAGGAGCACATTGATATCATTTCATTTTACAATGAAGTTTTCATTCCCTCTGTAAAGCCACTTCTGGTTGAACTTGGCCCTGGTGGAGCAACTATGAGAAGTGATCAACCACCTGAAGCTAACAACAAAAATGATGGTGCTTGCTTATTCCCTAAGTTACTTTCAATTATATACCTGCTACACAGTCCTGCATCCATGACACGTGTGCTTTACTTTTTACAGGCGATTTAG 2799 0.4101 MSPPAELEMEDTKSFVSMVDNGDQAESRFAEFSKNELALDEKSCNEAMELFGETKHLLMANVSSIGNGTAEEAERYWFAFILYSIKRLVQKNEESGKEETENTGLTLCRILRAAKLNVPDFFKELPQFVVKAGPILSNLYGSDWENRLEAKEMQANTIHLKALSKYYKRVFEEFFVSTDTNVENNSSVTTDHVSEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKNSKGVDLLASLCNIYNTSEDELRKTMEQANNLVADILKKKPCLASECQTENLENFEKDGLTYFKDLMEESSLPSSLNVLEKDYDHMTRNKGELDERLFINEDDSLLASGSLGSFSGGSVSTGGGKRKFDMMTSPAKTIASPLSPYRSPASHANGIPGSVNSKIAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDKDITSDVVRRAQIILQAIFPSSPLGDRCVTGILQSANLMDNIWAEQRRLEAMKFYYRVLATMCRAEAQILGNNLTPLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSCGGLPPVPSLPKPETLPAQNGDPRSPKRLCTEYRNVLVERNSFTSPVKERLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIICNYRKQPQCKPQVFRSVFVDWSLARRNGSSRQRTGQEHIDIISFYNEVFIPSVKPLLVELGPGGATMRSDQPPEANNKNDGACLFPKLLSIIYLLHSPASMTRVLYFLQAI 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01436 932 Gene3D - 194 354 - -
Tsu08g01436 932 SMART RB_A_2 420 620 IPR002720 GO:0005634|GO:0051726
Tsu08g01436 932 Gene3D - 703 898 - -
Tsu08g01436 932 Coils Coil 330 350 - -
Tsu08g01436 932 Coils Coil 269 293 - -
Tsu08g01436 932 Pfam Retinoblastoma-associated protein B domain 744 875 IPR002719 GO:0005634|GO:0051726
Tsu08g01436 932 PANTHER BNACNNG22930D PROTEIN 20 905 - -
Tsu08g01436 932 SMART DUF3452_2 88 235 IPR024599 -
Tsu08g01436 932 Gene3D - 423 610 - -
Tsu08g01436 932 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 905 IPR028309 GO:0006357|GO:0051726
Tsu08g01436 932 Pfam Retinoblastoma-associated protein A domain 420 620 IPR002720 GO:0005634|GO:0051726
Tsu08g01436 932 SUPERFAMILY Cyclin-like 742 883 IPR036915 -
Tsu08g01436 932 Pfam Domain of unknown function (DUF3452) 99 235 IPR024599 -
Tsu08g01436 932 SUPERFAMILY Cyclin-like 428 622 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01436 Tsu-Chr8 16707292 16714702 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Tsu08g01436 RB_A 1.2e-61 CL0065