Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01434 ATGGCGACTAAACGACCAGGTTCGGTTGACGATTTGAACTTCGATGCACTCCGGGAGCTTTTCAAGCCACACATAGAATCGTTCGATTATATGATTGATGCTGGATTGGAAACCATGTTCCAGCATATCAAACCTGTTGTAGTTACTCATCCTTCAAAGCCAACAACAAAGCTTACaaatatcctttttatttttttgttgaagttaATTAACAGTGATTCATTATGcttcaaatatgtttttttattatttCAGTGTAGACAAGCAAAAATCTCATATACAGGGAAGTTCACGGCAAAGGTGTGTTTTCAATATAATGACGGTAGGAATGAAGCGGCTCCTTCTATATACGAAAATATTAGTTTTGGGCACTTTCCCATAATGCTGAAGTCTAAGCTATGCAACTTGAAAGACAAGACTCCTCAGGGACTTGTGTCCTTCAAGGAAGAGGCATCGGAAATGGGCGGTTACTTCATCTTGAATGGCCTTGAGAGGTTTATTCGACCTATAATTATGCCAAAACGGAATTATCCGATGAGTACGGTGCGAAGTTCATTTAGTGACAGACGGGAAGGATATACTGATAAAGCAGTTGTAATAAGgTGTGTAAGAGCTGATCAAACCTCGTTAACGGTCAAATTATATTACCTTCGTAATGGGAGTGCAAGACTTGGTTTCTGGGTACAAGGAAGAGAGTACATGCTTCCTGTGGGCATTCTTTTGAAGGCCCTCATTGACACCACTGATCGAGAAATTTATGTAAATTTGACAAGCAATTATAATGAAAAGTATGAAAAGGGAAAGGGTGTTGTTGGAACCCATCTTGTTGGTGAAAGGGCAAAAATAATCTTAGACGAAGTTCGCAATTTGTCTCTTTTCACTCGTCTTCAATGTCTACAATATATCGGAGAGCATTTCCAACCTATTATGCGTGAACTCAGAAATGAAAGCCATTATATTGTCGCTGATGCTGTTCTGAATGACTACATACTTGTTCATCTCGGCAACAATTTTGACAAGTTCAATCTGCTCATATTCATGTTGCAGAAGCTTTTTTCACTTATAGATCATACATCGGTGCCAGATAACCCTGATAGCTTGCAAAATCAAGAGATTTTACTCCCTGGGCATCTGATCACAATTTATCTTAAGGAAAAACTAGAAGAGTGGCTGGCGAAGGGAAAATGGATGCTTCTGGAAgagattaataaaaaaggagagAACTTTGATTTCAATAACTGTTTACAAGTTAagaaaatttttgaaaaaaatcatgCATACGGAATCGGTTTAGCAATTGAAAACATGTTGAAAACTGGAAGATTGGCTACACAGACAGGTCTGGATCTGAATCAGAGGGCAGGATTTACAATCATGGCTGAACGGTTAAACTTTTTACGATTCCTGTCGCATTTTCGTGCTGTCCATCGAGGTGCTGCATTTGCCGGAGCTCGTAATACAACTGTGCGGAAACTATTGCCCGAATCTTGGGGTTTTTTATGTCCTGTACACACACCTGATGGGGAGCCCTGTGGATTATTGAATCATATGACCCGCACTTGTAAAATTACGTCATTCTATGATTCTCAaggaaatattaaaaattataggaACATTAAATCGGCTATCCGCAACATTTTAATTGAGACCGGAATGACACAAGCATTGCCAAAGATATTTTCACCTGGCCCGCCTGAAGTTCTTACTGTTCTTCTAGATGGTTGTGTTGTTGGTTTTATCCCTTCCACTGAGGTTGAGAAAGTTGTTGCTCACCTTCGAGAACTGAAAGTGTCATCTGCTGCAGCGACAGAAACTGTTGACTTGACAGAGCGAGGTAGTCGGTCAGAAAAATATTCAAGAACATTCCAAAAAAGTAACCTAGATAAATCTTGTCCTGCAATTGATTCGGATGGACTTCCACATGTTGGTCAGAGGATACGGCCAGACGAATCCTATTGTAGCACTTACAACTCAATAACGAATAAAACATCATACATCAAGAAAAAGGGTACTGAAGATGCTTATATCGACTCTGTTGCTGTTGACGTCAAAAAGGGGAAGCATCTAAGGAAGGCTAATATACGTTTTCGATACCCCCGAAACCCTATAATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGTGTTTGCTCTCAGTTGTGGCCAGACATTGACATGCCATTTTCTGGAAATACGGGGATGCGCCCAGATCTTATTATAAATCCTCATGCATTTCCTTCTAGGATGACGATTGCTATGCTTTTGGAATCTGTTGCTGCTAAGGGAGGTAGTTTACATGGAAAATTTAAAGATGCAACTCCATTTCGTAGTTCTGTGAAGACAGATGGTGAGAAGTCTGAATCCAAGTCGGCTTCACTTGTTGATGAGCTTGGTGTTATGTTAAAAGAGAAGGGATTTAATTACCATGGATGTGAGGTTCTGTACAGCGGGGTCTATGGAACAGAACTGAAGTGTGAGATATTCATTGGGCCTGTTTATTATCAGCGGCTTCGTCACATGGTTTCAGACAAATACCAAGTTCGATCTACCGGCCCTATTGACCCAGTCACCCGGCAGCCAGTAAAAGGACGAAAGCGTGGTGGAGGAGTACGATTTGGAGAAATGGAACGTGACTCTCTACTAGCACACGGGGCTGCGTATCTTTTGCATGATAGGCTGCACACCTGTTCTGATTATCACATTGCTGATGTGTGTTCCATTTGTGGAAGCATGCTTACGACAACATTCATCCAGCCTCCAAAGCTGCCGGTTCGACAGATTGGTGGATTACCCCCACGAAAACCTCCAAGTAAAGTCACTTGTGATGCTTGCAAAACTAGTAAAGGCATGGAGACAGTTGCCATGCCTTATATATTTAGATACTTGGCAGCAGAGTTAGCAGCAATGAACATTAAAATGACTCTGAAGCTAAGTAATGGAGCTAACACCACTGAGACAGGTCTTGCTGCAAATGCTCCTCCACCGAAAAGAGGGCGTCGTGGTAGGCAAGGACCTCCGGTGCGAGGAACATATGATGCGAAAGCGGGTGGTTCAGGTGGTTCTCGTTCACGCGCACGTCCACCGGTGCCTGATGATGACGATGACTTTGATGCCGGTCAATATTTAAATGAACTTGCTGATTATGATGAGGAACTTCAAGCaccacaaccacaacaacaacctGAACATGAACCACAAGAAACAAATGTAGAAGAAGAGGGTTATCTAGGAGGACCGCGTGATTTGTCCGTGCTAAAGGATTACCATAACCACCGGGCAATTCCGATATGA 3294 0.4062 MATKRPGSVDDLNFDALRELFKPHIESFDYMIDAGLETMFQHIKPVVVTHPSKPTTKLTNILFIFLLKLINSDSLCFKYVFLLFQCRQAKISYTGKFTAKVCFQYNDGRNEAAPSIYENISFGHFPIMLKSKLCNLKDKTPQGLVSFKEEASEMGGYFILNGLERFIRPIIMPKRNYPMSTVRSSFSDRREGYTDKAVVIRCVRADQTSLTVKLYYLRNGSARLGFWVQGREYMLPVGILLKALIDTTDREIYVNLTSNYNEKYEKGKGVVGTHLVGERAKIILDEVRNLSLFTRLQCLQYIGEHFQPIMRELRNESHYIVADAVLNDYILVHLGNNFDKFNLLIFMLQKLFSLIDHTSVPDNPDSLQNQEILLPGHLITIYLKEKLEEWLAKGKWMLLEEINKKGENFDFNNCLQVKKIFEKNHAYGIGLAIENMLKTGRLATQTGLDLNQRAGFTIMAERLNFLRFLSHFRAVHRGAAFAGARNTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTRTCKITSFYDSQGNIKNYRNIKSAIRNILIETGMTQALPKIFSPGPPEVLTVLLDGCVVGFIPSTEVEKVVAHLRELKVSSAAATETVDLTERGSRSEKYSRTFQKSNLDKSCPAIDSDGLPHVGQRIRPDESYCSTYNSITNKTSYIKKKGTEDAYIDSVAVDVKKGKHLRKANIRFRYPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFKDATPFRSSVKTDGEKSESKSASLVDELGVMLKEKGFNYHGCEVLYSGVYGTELKCEIFIGPVYYQRLRHMVSDKYQVRSTGPIDPVTRQPVKGRKRGGGVRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSICGSMLTTTFIQPPKLPVRQIGGLPPRKPPSKVTCDACKTSKGMETVAMPYIFRYLAAELAAMNIKMTLKLSNGANTTETGLAANAPPPKRGRRGRQGPPVRGTYDAKAGGSGGSRSRARPPVPDDDDDFDAGQYLNELADYDEELQAPQPQQQPEHEPQETNVEEEGYLGGPRDLSVLKDYHNHRAIPI 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01434 1097 Pfam RNA polymerase Rpb2, domain 6 608 867 IPR007120 GO:0003677|GO:0003899|GO:0006351
Tsu08g01434 1097 Gene3D RNA polymerase alpha subunit dimerisation domain 854 980 - -
Tsu08g01434 1097 CDD RNA_pol_B_RPB2 20 977 IPR015712 GO:0003899|GO:0006351|GO:0032549
Tsu08g01434 1097 Gene3D - 13 177 - -
Tsu08g01434 1097 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 601 976 IPR015712 GO:0003899|GO:0006351|GO:0032549
Tsu08g01434 1097 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 14 599 IPR015712 GO:0003899|GO:0006351|GO:0032549
Tsu08g01434 1097 Gene3D - 702 853 IPR037033 GO:0003677|GO:0003899|GO:0006351
Tsu08g01434 1097 Pfam RNA polymerase Rpb2, domain 3 459 523 IPR007645 GO:0003677|GO:0003899|GO:0006351
Tsu08g01434 1097 Pfam RNA polymerase Rpb2, domain 2 189 372 IPR007642 GO:0003677|GO:0003899|GO:0006351
Tsu08g01434 1097 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 16 980 - -
Tsu08g01434 1097 Pfam RNA polymerase Rpb2, domain 7 869 977 IPR007641 GO:0003677|GO:0003899|GO:0006351
Tsu08g01434 1097 Pfam RNA polymerase beta subunit 20 420 IPR007644 GO:0003677|GO:0003899|GO:0006351
Tsu08g01434 1097 Gene3D RNA polymerase Rpb2, domain 2 178 358 IPR037034 GO:0003677|GO:0003899|GO:0006351
Tsu08g01434 1097 MobiDBLite consensus disorder prediction 986 1097 - -
Tsu08g01434 1097 Gene3D - 612 701 IPR014724 GO:0003899
Tsu08g01434 1097 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 14 599 - -
Tsu08g01434 1097 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 601 976 - -
Tsu08g01434 1097 Gene3D - 359 565 - -
Tsu08g01434 1097 ProSitePatterns RNA polymerases beta chain signature. 705 717 IPR007121 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01434 Tsu-Chr8 16651018 16674921 Dispersed/Wgd