Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01415 ATGGGAAGTAGAATTCGGATTGGTGTTGAAGATGAGAAGGGAGCCGAAACAGGCATGCCGAGCTTCAATTCCGACGATGCACGCTATACAGAGGGGAACGCAGTTGATACTTTTCATGTTTCTGACTTTGGAGCATTTGGTCAACCATATCGTTTAGATGACGCTGTTGCTCTGAGTGGAAATTCAAACTCGGTTTTTAATTCGATTAAAGTAAGTGGCCGAACTATTTCTCCTGGCCGTGTTCACACCAGTACTTTGCCAACATCACTTGACAAAAGCCCATTGACGAACCAAACAGAACCGCATAGGTTGCAATTAACAAATCTTCAATCATCAAATCCAGGCAGTGGTAACATATTAAGTGTTCGTACAGAAAACCAGGACGAGTTTGCCATGGCCGATGCTAGTCCTAGGACTGATATTTCAACAGATGGTGACACCGATGACAAGAATCAGCGGTTTGATAGAAATCAATCTCTTGCTCCTGTGGGTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAGAAgACTCTCCGCAGGCTCGCTCAGAATCGTGAGGCGGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTCCAACAATTGGAAAGTAGTCGTTTGAAGCTGACACAACTAGAGCAAGAGCTTCAGCGAGCCCGACAACAGGGAGTCTTCATATCAAGTTCGGGTGAACAAACTCATTCACTGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAACTGAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGATATTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGCATGTGGAAAACGCCTGCTGAGAGGTGTTTTCTATGGCTCGGTGGTTTCCGGTCGTCTGAACTTCTCAAGCTTCTGGTAAGTCAATTGGAACCTCTCACAGAGCAGCAATTGATGGGTATTACCAACTTGCAACAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTACAACAGTCCCTTGCAGAGACGTTGTCCACTGGCGCACCTTCCTCATCTGGTTCATCAGGGAATGTGGCTAATTACATGGGTCAAATGGCTATGGCCATGGGCAAGCTTGGGACACTCGAGGGTTTCATTCGACAGGCTGACAATCTGCGCCAGCAGACGCTACAACAAATGCACCGAATATTGACAACACGTCAATCGGCTCGTGCACTTCTTGCCATACATGATTACTTTTCGCGACTGCGCGCTCTCAGCTCCCTCTGGCTGGCCCGTCCAAGAGATTAA 1392 0.4591 MGSRIRIGVEDEKGAETGMPSFNSDDARYTEGNAVDTFHVSDFGAFGQPYRLDDAVALSGNSNSVFNSIKVSGRTISPGRVHTSTLPTSLDKSPLTNQTEPHRLQLTNLQSSNPGSGNILSVRTENQDEFAMADASPRTDISTDGDTDDKNQRFDRNQSLAPVGSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGEQTHSLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDDIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPSSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01415 463 Coils Coil 254 274 - -
Tsu08g01415 463 MobiDBLite consensus disorder prediction 76 97 - -
Tsu08g01415 463 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Tsu08g01415 463 MobiDBLite consensus disorder prediction 141 155 - -
Tsu08g01415 463 SMART brlzneu 174 237 IPR004827 GO:0003700|GO:0006355
Tsu08g01415 463 Coils Coil 197 224 - -
Tsu08g01415 463 CDD bZIP_HBP1b-like 178 230 - -
Tsu08g01415 463 Pfam Basic region leucine zipper 174 220 IPR004827 GO:0003700|GO:0006355
Tsu08g01415 463 PANTHER TRANSCRIPTION FACTOR TGA9 59 463 - -
Tsu08g01415 463 Gene3D - 177 226 - -
Tsu08g01415 463 MobiDBLite consensus disorder prediction 1 28 - -
Tsu08g01415 463 MobiDBLite consensus disorder prediction 130 180 - -
Tsu08g01415 463 Pfam Seed dormancy control 260 336 IPR025422 GO:0006351|GO:0043565
Tsu08g01415 463 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 59 463 - -
Tsu08g01415 463 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Tsu08g01415 463 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Tsu08g01415 463 ProSiteProfiles DOG1 domain profile. 243 460 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01415 Tsu-Chr8 16443895 16449597 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu08g01415 DOG1 1e-32 No_clan