Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01379 ATGGAAGATAATCCTACTTCAAGTCTTTTGGAAGGGAAGGTTATTGGGATCCGATTCAGTATGGCTACACGCCAGGAAATTAGTACTGCATCAATTAGCGATTCCCAAATTAGCCATGCTAGTCAGCTGGGAAATCCATTTCTTGGGCTTCCGCTCGAGTTTGGACGATGTGAATCCTGTGGCACTTCCGAAGCAGGGAAATGCGAAGGCCACTTTGGTTACATCGAACTTCCAGTGCCAATATACCATCCTAGTCATGTTACTGAGTTGAAGCGGATACTGAGCCTAGTCTGCTTAAGCTGCTTAAAACTGAAGAAAACAAAGGCACCTTCTTCAAGCAGTGGTTTGGCACAGAGATTATTATCTCCTTGTTGTGAGgaTGTTAATGCTTCACAAGTTTCTATTCGGGAGGTCAGAACAGCTGATGGGGCTTGTTACTTAGCACTGAAGGTGCCAAAGACAAAGATGCATGACGGATTTTGgagttttttagaaaaatatggcTATCGCTATGGGGGTGATCATACTCGAGCTTTGCTTCCTTGTGAGGCAATGGAAATTATCAAGAGAATTCCtccagaaacaaaaaagaaacttGCTGCAAAAGGATATTTTCCTCAAGATGGATATGTTTTGAAATACCTTCCGGTACCACCAAATTGCTTGTCTGTGCCAGTAGTTTCGGATGGTGTCAGTATCATGTCTTCGGATCCTGCCATGACGATTCTTAGAAAATTGCTTAGGAAGGTTGAAGTCATCAGAAGTTCTAGATCTGGCGAGCCAAACTTTGAGTCTCATCAAGTGGAAGCTAACGATTTGCAATCCGTGGTTGATCAGTATCTTCAAATTAGGGGTACTTCTAAGGCCGCGCGTGATATAGAAACCCATTATGGGGTCAATAAAGAGCTGAATGATTCCTCAACAAAAGCATGGTTAGAGAAAATGAGGACTTTATTTATAAGAAAGGGTTCAGGGTTTTCTTCCCGGAATGTAATAACTGGAGATGGCTATAAGAAAATAAACGAAGTAGGAATACCGCTTGAGGTTGCCCAAAGGATAACATTTGAGGAGAGAGTAAGCAGCCATAACATCCATTATTTACAAAAGTTGGTTGATGAAAACTTGTGCTTGACATACAAGGAAGGTTTGTCAACTTACTCGCTAAGGGAGGGCTCAAAGGGGCACACTTATCTTAAAATAGGTCAGATCGTCCATAGGAGGATTATGGATGGTGATACAGTCTTCATCAACAGACCGCCAACTACCCACAAGCACTCCTTGCAAGCGCTTGTGGTGTACATCCACGATGACCACACAGTCAAAATTAATCCACTTATATGTGGACCCCTCGGAGCGGACTTTGATGGCGACTGTGTCCATCTGTTTTATCCCCAGTCGCTCGCTGCTAAAGCCGAGGTTTTGGAGCTTTTCTCTGTAGAGAAACAACTCCTCAGCTCTCACAGTGGCAATTTGAACCTCCAATTATCCTCAGATTCGTTACTGTCACTAAAGATGCTAGTTAAGAGTTGTTTTTTGGATAGAGCAACTGCAAATCAAATGGCAATGTTTCTTTCACTGCCTTTGCCAATGCCTGCTTTGCTTAAGGCCACTTCTGGTGATTCTTTTTGGACATCTATTCAAATTTTGCAGTGTGCTTTGCCTTTCTCGTTTGATTGTACTGGAGTACGGTACTTGATTAGGCAGAGGGAAATCTTAGAATTTGATTTTACCAAAGATGTCTTGCCTTCAGTTATAAATGAAATAGCagcctcaattttttttggcaaGGGTCCTAAGGAGGCACTCAATTTCTTTGACGTGATCCAGCCCTTTCTGATGGAAAACATATTTGCCCATGGATTTAGTGTTGGATTACAAGACTTTTCAATATCCAGGGCAGTGAAAAGAGTTATAAATAGAAGTATTGGGAAAGTTTCTCCTTTGTTGCGTCAGCTGAGGGACATATATCAAGATCGTGTGGCTCAACAATTGGAGAACCTCATTCAAGATATTGAACTTCCAGTCATAAATTTTGCTTTGAAGTCAACCAAACTTGGAGATTTGATTGACTCGAAGAGTAAGTCGGCGGTTGACAAGGTGGTTCAACAGATTGGCTTTTTAGGCCAACAACTCTTTGagagaggaaagttttattccaagggATTGGTTGAGGATGTAGCTTCCCATTTTCATGTGAAGTGTTTCTATAAAAAGGAAGATTATCCCTCTGCTGAGTTTGGTTTACTCAAAGGATGCTTTTTTCATGGTTTAGATCCATATGAAGAGTTGGTGCATTCAATTGCAACGAGAGAAATAATTGACCGCTCTTCTAGAGGATTATCTGAACCAGGCACACTATTTAAGAACTTGATGGCCATTCTCCGCGATGTTGTTATTTGCTATGATGGAACTGTGAGAAATGTGTGTAGTAATTCCATCATCCAATTTGAATATGGCATACAATCTGGAGACGCAGCACACCACTTATTCCCTGCTGGTGAGCCTGTAGGTGTCTTAGCTGCAACTTCTATGTCTAACCCTGCTTATAAAGCAGTCCTTGATGCTAGTCCTAGCAGTAATTCTTCCTGGGGATTTATGAAGGAAATACTCCTTTGCAAGGTGAACTTCAGGAATGAACCAAATGATCGCCgtgtaattttatatttaaatgatTGTGATTGCGGTAGGAATTATTGTCGAGAACGTGCTGCATATTTGGTTAAAAATCAATTAACCAAAGTAAGCCTCAAGGATGCAGCAGTAGATTTCATCGTTGAATACCAGCAGCAGCGAAGACGCAATGATGGTACTGAAGATGCAGGCCTTGTTGGTCATATTCATCTAAATGAGGTGATGTTAGAGAACCATAAGATCAACATGACTGAAGTTTACCAAAAATGCCAAGAGAAACTTGATTCCTTTAGTCGGAAGAAGAAACTTTACACAGTTTTAAGGAGAACCGAATTGTCTTTCAGTGAGTCATGCTATTCTCCTAATTATGCTGCCCCTTGTATAACGTTCGTTTGGCCAGATGGTGATGATTTGGACCAAACCACTAAAGTCCTTGCTGACATTATCTGCCCAGTTCTGTTAGAAGCCATAATCcaagGAGACCCTCGTATCAGCTCGGCAAGTATAATTTGGGTTAATCCTGGAACTAACACATGGGTCCGTAACCCGTCCAAATCTTCTAATGGTGAATTAGCACTGGACGTCATTCTTGAGAAGGAAGCTGTTAAACAAAGTGGTGATGCTTGGAGGATTGTACTTGATTCCTGTCTTCCTGTTCTTCATTTGATTGATACTAGGCGTTCCATCCCTTATGCTATTAAGCAAATTCAGGAATTACTGGGGATATCATGTACTTTTGATCAAGCGATTCAGCGTCTTGCAGCATCAGTACGAATGGTGGCAAAAGGTGTTCTCAGAGAGCATCTCATTCTCTTAGCAAGTAGTATGACTTGTGGTGGCAATTTGGTTGGTTTTAATACAGGTGGTTATAAAACGCTGGCTCGTCAATTAAATATTCAAGTACCATTCACCGATGCAACACTCTTTACTCCTAGAAAATGCTTTGAAAGAGCTGCTGAGAAACACCACGCAGACTCTTTGTCAAGCATTGTTGCTTCCTGTTCATGGGGTAAACACGTGGCGGTTGGTACAGGATCAAGATTTGATATTGTATGGGATCCTAAAGAGATTAACACAAATGAAATTGAAGGGATGAATGTTTACAATTTTCTTCACATGGTCAAAGGCCTTGCCAATGGGGAAGAAGAAAACAATGCTTGTTTGGGTGAGGACATTGATGATTTGCTCGATGAGGAAAATGTGGACTGGGATATGTCCCCACAGCATACCTCTGGATTTGATGCTGTCTTTGATGAGACTTTTGAACTACTGAATGGCCCAACATCAAATGGTTGGGATTCAAATAAAGACCAGATTgatcaaaccaaaacaaactcGAATGATTGGTCTGGTTGgggacaaaaaaaatctgaaataCAAGACTCTTCAAAGTCTAGTGGCTGGGGGGCTGCCACCAATCAAAATAGTGAGTCTTCCTGGGGTAAAAAAGGAGGTGAAGATGGTGCAGTACAAAACACCCAATGGGAGTCCGGGATTCAAGAAGACTCTTCAAAGTCTAGTGCTTGGGGGGCTGCCACCAATCAAAATAATGATAAGTCTTGGGGTAAAACGAAACCTGTAGCACAAGATGCAGTACAAACCACCCAATGGGAGTCCGGGATTCAAGAAAACTCTTCAAAGTCTAGTGCATGGGGGGCTGCAACAAATAAAAGTAATGATCATATCCAAGAAGACTCTTCAAAGTCTGGTGCTTGGGGGGCTGCTACAAATCAAAACAGTGACCAGTCTGATGGACCTCAAAAGGCTACGTGGGTGTCTGGAAGCTCTCAAAAATCTAGTGCTTGGGGGGCTGCAACAAATAAAAGTAATGATCATATCCAAGAAGACTCTTCAAAGTCTGGTGCTTGGGGGGCTGCTACAAATCAAAACAGTGACCAGTCTGATGGACCTCAAAAGTGGAGATCTGAGGTTGCCCAAAAAGACTCTTCAAAATCTGGTGCTTGGGAGGCCAACACAATTCAAAACAGTGGTCAGTCCTCATGGGGCAAAAATAAAACTGCAGTGGTAGATGCTGGAGAGGAAATGGCTCACAAAGAGTCTGGGAGCATTACAAAATGGAAAGCAGATGGTATCCAAGAAAACTTGTCAAACTCAGGTGGTTGGAAAGCATGGGGAAATAGTAAACCCGATGTACGTCAGGGTGAGTCTATAAAAGTACAAGATTCTTGGAACTCCCAGAAATCGAAAGCTGGAGCTGATGTTACCGAAGAAGACTCTGCGAAGTCTAGTGCTTGGGGGAAGTCCAAATCACCAGAAAACCCAAATAGCTCTTGGGGAAAGCCCAAATCACCAGAAAACCCAAATAGCTCTTGGGGAAAGCCCAAATCACCAGAAAACCAACCTTTGGATAACAAGAATGAATCAAATAGCTCTTGGGGAAAACCCAAATCACAAGAAAACCAGCCTTGGGATTCCAAAACTGAGCCAAATAGTAGTAGCTCTTGGGGAAAACCCAAATCGCAAGAAAACCAGCCTTGGGATTCCAAGACTGAGCCAAATAGTAGCTCTTGGGGAAAACCCAAATCACAAGAAAACCAGCCTTGGGATTCCAAAACCGAGCCAAATAGTAGCTCTTGGGGAAAACCCAAATCACAAGAAAACCAACCTTGGACCAAGAATGACTCGAATCAAAGTGCAAGTTCACGTGGATGGGACTCACATGTTGCTTCTGCTAACTCTGATGGCGACCGAAGTTTTCAGTGGGGAAAACAAGGAAGAGACTCATTTAAGAAAAATCAGTTTGAAGGTTCACAAGGTCGGGGTTCAAATGCCGGGGACTGGAGAAATCAGAATCGCCCTACCAGAGCACCTGGACAGAGGTTCGAATTATACTCTTCTGAGGAGCAGGATGTTCTCAAGCATATTGAACCTATTGTGCAGTCCATCAGAAAAATCATGCAGCAAGAAGGATACAATGATGGGGATCCACTAGCTGCTGATGACCAAAAGTATGTTCTTGAGAATGTCTTTGAACATCATCcagataaagaaacaaaaatgggTGCCGGAATTGATCATGTCATGGTTAGCAGACACAGCAATTTTCAGGACAGCAGATGCTTGTATGTGGTTTTAAAAGATGGTAAAAAAGAAGACTTTTCGTACCGCAAGTGCCTGGAAAACTTAGTGAGGAAGACATTTCCAGAAACTGCTGAATCGTTCTGCGGAAAATATTTTAGGAAACCTCAACCCCGTGTAAAGAGGGACCAGACTCCAAACCCAGCAGGGGGGGAGCAGACTGCAAATCCAAACCCCGCAGGGGAGCAGACTGCAACTCCAAACCCAGCAGGGGAGCAGACAACTACTCCAGCGGGGGATCAGACTTCCACACCAAATCCAGCGGAGGACCAGAACACAACTCCAATGGTTATGGAAACCAATGAGTAG 6039 0.4178 MEDNPTSSLLEGKVIGIRFSMATRQEISTASISDSQISHASQLGNPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVTELKRILSLVCLSCLKLKKTKAPSSSSGLAQRLLSPCCEDVNASQVSIREVRTADGACYLALKVPKTKMHDGFWSFLEKYGYRYGGDHTRALLPCEAMEIIKRIPPETKKKLAAKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSIMSSDPAMTILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDIETHYGVNKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVSSHNIHYLQKLVDENLCLTYKEGLSTYSLREGSKGHTYLKIGQIVHRRIMDGDTVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSSDSLLSLKMLVKSCFLDRATANQMAMFLSLPLPMPALLKATSGDSFWTSIQILQCALPFSFDCTGVRYLIRQREILEFDFTKDVLPSVINEIAASIFFGKGPKEALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRDIYQDRVAQQLENLIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVVQQIGFLGQQLFERGKFYSKGLVEDVASHFHVKCFYKKEDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAHHLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRERAAYLVKNQLTKVSLKDAAVDFIVEYQQQRRRNDGTEDAGLVGHIHLNEVMLENHKINMTEVYQKCQEKLDSFSRKKKLYTVLRRTELSFSESCYSPNYAAPCITFVWPDGDDLDQTTKVLADIICPVLLEAIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTPRKCFERAAEKHHADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEINTNEIEGMNVYNFLHMVKGLANGEEENNACLGEDIDDLLDEENVDWDMSPQHTSGFDAVFDETFELLNGPTSNGWDSNKDQIDQTKTNSNDWSGWGQKKSEIQDSSKSSGWGAATNQNSESSWGKKGGEDGAVQNTQWESGIQEDSSKSSAWGAATNQNNDKSWGKTKPVAQDAVQTTQWESGIQENSSKSSAWGAATNKSNDHIQEDSSKSGAWGAATNQNSDQSDGPQKATWVSGSSQKSSAWGAATNKSNDHIQEDSSKSGAWGAATNQNSDQSDGPQKWRSEVAQKDSSKSGAWEANTIQNSGQSSWGKNKTAVVDAGEEMAHKESGSITKWKADGIQENLSNSGGWKAWGNSKPDVRQGESIKVQDSWNSQKSKAGADVTEEDSAKSSAWGKSKSPENPNSSWGKPKSPENPNSSWGKPKSPENQPLDNKNESNSSWGKPKSQENQPWDSKTEPNSSSSWGKPKSQENQPWDSKTEPNSSSWGKPKSQENQPWDSKTEPNSSSWGKPKSQENQPWTKNDSNQSASSRGWDSHVASANSDGDRSFQWGKQGRDSFKKNQFEGSQGRGSNAGDWRNQNRPTRAPGQRFELYSSEEQDVLKHIEPIVQSIRKIMQQEGYNDGDPLAADDQKYVLENVFEHHPDKETKMGAGIDHVMVSRHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKTFPETAESFCGKYFRKPQPRVKRDQTPNPAGGEQTANPNPAGEQTATPNPAGEQTTTPAGDQTSTPNPAEDQNTTPMVMETNE 2012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01379 2012 Pfam RNA polymerase Rpb1, domain 3 482 627 IPR007066 GO:0003677|GO:0003899|GO:0006351
Tsu08g01379 2012 Gene3D RNA polymerase II, clamp domain 6 122 IPR044893 -
Tsu08g01379 2012 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 198 1380 - -
Tsu08g01379 2012 Pfam RNA polymerase Rpb1, domain 5 756 1169 IPR007081 GO:0003677|GO:0003899|GO:0006351
Tsu08g01379 2012 Gene3D - 322 486 - -
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1301 1821 - -
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1524 1549 - -
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1301 1358 - -
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1554 1568 - -
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1945 2012 - -
Tsu08g01379 2012 Pfam RNA polymerase Rpb1, domain 1 41 282 IPR007080 GO:0003677|GO:0003899|GO:0006351
Tsu08g01379 2012 Gene3D RNA polymerase Rpb1, domain 3 487 622 IPR042102 -
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1957 2012 - -
Tsu08g01379 2012 SMART rpolaneu7 208 507 IPR006592 GO:0003677|GO:0003899|GO:0006351
Tsu08g01379 2012 Pfam RNA polymerase Rpb1, domain 2 325 479 IPR000722 GO:0003677|GO:0003899|GO:0006351
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1571 1587 - -
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1628 1783 - -
Tsu08g01379 2012 PANTHER DNA-DIRECTED RNA POLYMERASE 198 1380 IPR045867 GO:0003899|GO:0006351
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1367 1517 - -
Tsu08g01379 2012 Gene3D - 796 831 - -
Tsu08g01379 2012 MobiDBLite consensus disorder prediction 1795 1820 - -
Tsu08g01379 2012 Gene3D RNA polymerase ii 354 406 - -
Tsu08g01379 2012 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 13 1232 - -
Tsu08g01379 2012 Coils Coil 1255 1275 - -
Tsu08g01379 2012 Pfam Protein of unknown function (DUF3223) 1854 1923 - -
Tsu08g01379 2012 Gene3D - 1833 1928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01379 Tsu-Chr8 16022639 16045427 Dispersed