Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01347 ATGTCTTCACCACATGAAAAATCTGATACTAAAGATGTATCAGGTCCACATAAAAGGCTATCAAGTCTGATGCATCAAGCTGGAAACAAGTTTTGCGCCGACTGCGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCGGGTGTACATAGAAGTCTAGGAGTCCATATTTCAAAGGTTGCATCGTTGAAGCTAGATCAATGGACAGATGAACAAGTTGATGCATTAGAGAAATTAGGTGGAAATACACTGTTAAATAAAAAGTATGAAGCTTACATCCCAAGTCatataaaaaaaccaaaaccacaTACCTCGATCGAAGAGCGCTCCGAGTATATAAGgaaaaaatatgaacaattaCTATTCATAGAGTGCAATGACAATGCCGCATGCGCAATTGTACCAGCCCAACAAGGAAGAAGTTTATCATTGTTTCAGAGTGGTTCTTCATGTTACACTTTTCATATGGACCAGAAAAAATACGACAAAGCCCCAACAAAACATCGTATCGGACATGCATTTCGAAATAGTTGGGCAAGAAAAGATTCTGAGCACAAGTCTTCTTCAAAGAAGAGTACCTCATTGGCAGGTATGGTTGAATTTGTAGGGTTGATTAAGGTTAATGTTGTGAAAGGCACTCACTTGGCTGTTAGAGATGTAATGACCAGTGACCCTTATGTGATCCTTTCTTTGGGACACCAATCGGTAAAAACACGCGTTATAAAGAACAATTTGAATCCAGTTTGGAATGAAAGTCTAATGCTATCCATTCCGGAAAACATTCCTCCCCTTAAAGTGCTAGTGTATGATAAAGATACATTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCACTTGTTTTAGCTGCAATTGCATATGAAAAATCTTCAAGCAATGAGCCTATGCAAATTGAGAAATTTGTAGCAAGCAAGAACAACAGTCTTGTTAGAGATGGTACCATATCTCTTGATGAAGGAAAGATCAAACAAGAAATCTCAGTGAGGCTACAGAATGTTGAGAGAGGTGTTCTTGAGATTGAGCTTGAATGTGTTCCTCTTACTCAATAG 1107 0.3749 MSSPHEKSDTKDVSGPHKRLSSLMHQAGNKFCADCGTPEPKWVSSSLGVFICIKCSGVHRSLGVHISKVASLKLDQWTDEQVDALEKLGGNTLLNKKYEAYIPSHIKKPKPHTSIEERSEYIRKKYEQLLFIECNDNAACAIVPAQQGRSLSLFQSGSSCYTFHMDQKKYDKAPTKHRIGHAFRNSWARKDSEHKSSSKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSSSNEPMQIEKFVASKNNSLVRDGTISLDEGKIKQEISVRLQNVERGVLEIELECVPLTQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01347 368 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Tsu08g01347 368 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 368 IPR044518 GO:0005096|GO:0005543
Tsu08g01347 368 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 209 302 IPR035892 -
Tsu08g01347 368 CDD ArfGap 20 126 - -
Tsu08g01347 368 Pfam C2 domain 213 299 IPR000008 -
Tsu08g01347 368 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Tsu08g01347 368 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Tsu08g01347 368 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Tsu08g01347 368 ProSiteProfiles C2 domain profile. 195 310 IPR000008 -
Tsu08g01347 368 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Tsu08g01347 368 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 9 368 - -
Tsu08g01347 368 SUPERFAMILY ArfGap/RecO-like zinc finger 18 132 IPR037278 -
Tsu08g01347 368 SMART C2_3c 213 308 IPR000008 -
Tsu08g01347 368 CDD C2_ArfGAP 211 355 - -
Tsu08g01347 368 Gene3D C2 domain 210 367 IPR035892 -
Tsu08g01347 368 Gene3D Arf GTPase activating protein 2 139 IPR038508 -
Tsu08g01347 368 SMART arf_gap_3 18 139 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01347 Tsu-Chr8 15449524 15452219 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00301 03 2471710 2475549 Tsu08g01347 08 15449524 15452219 PCT