Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01346 ATGGAGTCTTTAGTTCTTAAACTCCATGAAATCTCAGCTGTCAAATTTGGAAACTTCAAGCTCAAATCCGGCATCTCCTCACCAATTTACATAGACCTCCGCCTTGTTATATCTTACCCTTCTGTTCTCCGGCAAATTTCTCAAACTATGATTTCTTCTGTCTCGAACACTAAATTTGACCTTGTCTGTGGTGTCCCTTATACCGCTCTTCCTATTGCCACTTGTGtgtctgtcacacacaacatccCTATGGTCATGCGCCgcaaagaaataaaagattacGGCACTTCTAAAGCCATTGAAGGTGATTTTAAGCATGGCCAAAGTTGCTTGGTAATTGAGGATTTAGTTACTAGTGGCACATCGGTTTTGGAAACTGCTGCGCCGTTGCGTGGCATAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGAAGAGAGAATTTGGAAAGTAATGGAATCAAGTTGCACGCGATTCTTAAATTGACCgaaatggtgaaaattttgAGAGAAAAAGGAAGACTTGATCAGGAGATGGTTAGGGTTGTTATGAGATTCTTAGAGGAAAATCAGAAGGTTGCTGCTTTGGAAAATACAACGAAGGTCAAGAAGGTATTGTCGTATTTGGAGAGGGCTAAGTTGTCCAAGAATCCAATGGGAAAGAGGTTGTTTGAGATAATGGTTGAAAAGGAAAGTAATCTGTGTTTTTCTGCAGATGTTGGGACTGCAGCTGAATTGCTTGAAATTGCTGATAAgGTTGGTCGTGAGATATGTTTGCTGAAAACTCATGTGGATATCTTTCCAGATTTTACTCCGGATTTTGGCTCAAAGCTTCGCGCGATTGCAGAAAAACACAACTTCTTAATATTTGAGGATCGTAAATTTGCCGACATTGGTAAAACAGTGACCATGCAGTATGAAGGAGGGATTTTTCATATATTGGATTGGGCTGATATAGTAAATGCTCACATTATCTCTGGTCCCGGAATTGTAGATGGACTGAAATTAAAGGGTTTGCCTCGTGGAAAGGGTTTATTGCTACTTGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACTTCTGCTGCAGTGAAAATTGCTGAGGATCATTCTGACTTTGTTATTGGCTTCATCTCGGTCAATCCAGCATCGTGGTCCGGTGCACCGATAAATCCTTGTTTCATTCAAGCAACTCCTGGAGTTCAAATGGAAGTTGGTGATGATGGTTTTGGGCAGCAATATAATACTCCATATTCTgtTATCCATGATAGGGGTAGTGACATTATTATAGTGGGGCGTGGCATCATCAAGGCAGAAAATCCAGCTGCGGCAGCTCGTGAATACCGTCTTCAAGGATGGAATGCATATTTGGACAAGTGCAAGTAA 1410 0.4 MESLVLKLHEISAVKFGNFKLKSGISSPIYIDLRLVISYPSVLRQISQTMISSVSNTKFDLVCGVPYTALPIATCVSVTHNIPMVMRRKEIKDYGTSKAIEGDFKHGQSCLVIEDLVTSGTSVLETAAPLRGIGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVKILREKGRLDQEMVRVVMRFLEENQKVAALENTTKVKKVLSYLERAKLSKNPMGKRLFEIMVEKESNLCFSADVGTAAELLEIADKVGREICLLKTHVDIFPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGKTVTMQYEGGIFHILDWADIVNAHIISGPGIVDGLKLKGLPRGKGLLLLAEMSSAGNLAKGDYTSAAVKIAEDHSDFVIGFISVNPASWSGAPINPCFIQATPGVQMEVGDDGFGQQYNTPYSVIHDRGSDIIIVGRGIIKAENPAAAAREYRLQGWNAYLDKCK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01346 469 SUPERFAMILY Ribulose-phoshate binding barrel 212 466 IPR011060 -
Tsu08g01346 469 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 237 456 IPR001754 GO:0004590|GO:0006207
Tsu08g01346 469 CDD PRTases_typeI 55 166 IPR000836 -
Tsu08g01346 469 SUPERFAMILY PRTase-like 3 190 IPR029057 -
Tsu08g01346 469 Gene3D - 1 209 IPR029057 -
Tsu08g01346 469 SMART OMPdecase_2 238 456 IPR001754 GO:0004590|GO:0006207
Tsu08g01346 469 TIGRFAM pyrE: orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Tsu08g01346 469 Pfam Phosphoribosyl transferase domain 49 152 IPR000836 -
Tsu08g01346 469 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 469 - -
Tsu08g01346 469 CDD OMP_decarboxylase_like 239 456 - -
Tsu08g01346 469 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 294 307 IPR018089 GO:0004590|GO:0006207
Tsu08g01346 469 PANTHER PHOSPHORIBOSYLTRANSFERASE, OROTIDINE 5-PHOSPHATE DECARBOXYLASE 1 469 - -
Tsu08g01346 469 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 239 457 IPR014732 GO:0004590|GO:0044205
Tsu08g01346 469 Gene3D Aldolase class I 210 469 IPR013785 -
Tsu08g01346 469 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 225 IPR023031 GO:0004588|GO:0006221
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01346 Tsu-Chr8 15440744 15443487 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00300 03 2466213 2471070 Tsu08g01346 08 15440744 15443487 PCT