Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01344 ATGGCATTGAGTAATCCACTCTTTGATGCTATACGGAGTAACAGTGATGTTGATCCTCCTCAAATTGAAGAGTCAATAGATGTTGGTGAATTGATGAATGATCCTGCTGCACAAACTGTTCCTAAACCTACTGGAATTTTAAGCAGTGTTCGTGAGCTTTTAGATTGTCCTGTATGCCTGAATCCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCATACTATATGTACAGATTGCAAACCTAGGGTACATAACCGGTGCCCTACTTGTAGGCATGAGCTGGGAAATATTAGATGTCTAGCATTGGAGAAGGTGGCTTCAACTTTTGCACTACCTTGTAAATACAAAACTTTTGGGTGCATCGGAATATATCCATACTACGACAAGCCAGAACATGAATGTCAATGTTCATATAGACCTTATAACTGTCCATATGCTGGTTCCCAATGCTCTATTGTGGGTGATATATCCTACCTGGTGAACCATCTGAAGGAAGATCACAAAGTCGACATGCACAATGGTAGCACTTTTAACCATCGTTACGTCAAATCAAATCCTCATGAAGTCGAAAACGCCACATGGATGTTAACGGTTTTCAGCTGTTATGGTCAGTACTTTTGTCTACATTTTGAAACTTTTCAACTTGGAACTGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGCGATGATAGCGAGGCAAAAAAGTATAGCTACAGTCTAGAGGTAGGCGGAAATGGGAGGAAGATGGTTTGGCAGGGAGTGCCAAGAAGCATCAGGGAAAGCCACTCCAATATTCGTGACAGTTTTGACGGTCTCATTATTCAGAGGAATATGGCACTCTTCTTTTCAGGTGGTGACCGGAAAGAGTTGAAGCTAAGGGTTACCGGTAGAATTTGGAAAGAACAATGA 915 0.4186 MALSNPLFDAIRSNSDVDPPQIEESIDVGELMNDPAAQTVPKPTGILSSVRELLDCPVCLNPMYPPIHQCSNGHTICTDCKPRVHNRCPTCRHELGNIRCLALEKVASTFALPCKYKTFGCIGIYPYYDKPEHECQCSYRPYNCPYAGSQCSIVGDISYLVNHLKEDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCYGQYFCLHFETFQLGTAPVYIAFLRFMGDDSEAKKYSYSLEVGGNGRKMVWQGVPRSIRESHSNIRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01344 304 CDD RING-HC_SIAHs 54 92 - -
Tsu08g01344 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 14 304 - -
Tsu08g01344 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Tsu08g01344 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu08g01344 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 164 IPR013083 -
Tsu08g01344 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Tsu08g01344 304 SUPERFAMILY RING/U-box 38 95 - -
Tsu08g01344 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 14 304 - -
Tsu08g01344 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Tsu08g01344 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 110 IPR013083 -
Tsu08g01344 304 SUPERFAMILY TRAF domain-like 112 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01344 Tsu-Chr8 15432513 15436922 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00299 03 2453675 2464636 Tsu08g01344 08 15432513 15436922 PCT