Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01338 ATGATAAAACAAGGTTTCTCTAGAAGTAGTTATGACAGTTGTGTCTATGTTCAGAAGCTTCGTGGAGGTGATTACATCTATCTATTATTGTATGTCGATGACATGCTTATTGCTTCAAAAAGCAAGGTGGAGATAGATGAGCTGAAGTCTAAACTTGGTAAAGAGTTTGAGACGAAGGATTTGGGCGCTGCGAAGAAAATACTAGGTATGGAGATTAGAAGAGAGCGGACAAACCGGAAATTGTTCTTGAGTCAAAAAGGCTATTTAGAACGGGTTGTTGAAAGGTTTGGAATGAAAGGTGCTAAGTCGGTGGTTACTCCGTTAGCTCCACATTTTAGGCTTTCTGGTAATCAGTCTCCCACTATAGCAGAAGATAAGGAATATATGGAAAATGTACCTTATGCTAGTGCAGTTGGCAGTTTGATGTACGCTATGGTGTGTACACGTCCAGATATTTCACAAGCGGTAAGTGTTGTCAGTAGATTTATGGCGAATCCGGGAAAGGCGCACTGGGAAGCAGTGAAATGGATTTTGAGTGGTTTTAGTGTTGAACTTATTCATCGTGACTCACCAAAATCACCACTCTACAATCCCACACAAAATAAGTACGAACATATTATCAATGCTGCACGTCGTTCCTTCAACCGTGCCAATCATTTGAACAAAGTTTCCCTCACAACAAGTGCCGCCGAATCAACTGTAATACCCGATAATGGTGAATATCTCATGACCTATTCAGTTGGTACCCCTCCATTTAAGTTATATGGTGTTGCTGACACAGGTAGTGACATTGTTTGGCTTCAATGTCAGCCTTGTGACCCATGTTTCAACCAAACAACTCCCAAATTTaatccatcaaaatcatcatcttaCAAAAACATTCCTTGTTCGTCTGACCTATGTCAATCGGTAAGAGATTCATCTTGTAATGGCGATAATTGTCAATATACTATTTCTTATGGTGATCAATCACATTCTCAAGGAGATCTTAGTCTTGAAACTCTTACATTGGAATCCACAACTGGACGTCCTGTTTCATTTCCTAAAACTGTGATAGGATGTGGAACACAAAATGATGTTTCGTTTGAAGGTCAAAGCTCTGGTATAGTTGGCCTTGGTGGTGGACCTATATCTCTTATAACACGATTGGGATCCTCAATTGAAGGGAAATTTTCTTATTGTTTATTGCCATCATCCTTCCGTGGGTCAAACACGAcaacaaaactcaattttggaGATGCTGCTGTGGTTTCAGGAGCCGGTGTTGTGTCAACTCCTCTAGTGAACAAGGATTCACCAGTTTTCTACTATTTAACATTGGAATCATTCAGTGTTGGAAACAAAAAAGTACTATATGGAGGGTCATTTTTAGGTGATTCCGAAGAGGGTAACATCATAATTGATTCAGGTACAACATTGACACTTTTACCACCCGATGTTTACAGCAATTTGGAATCAGCCGTGTCAGAAGCGGTGAAACTAGAACGTGCTGATAGTCCTGTTCCAGAATTAAGTCTTTGCTACAGTCTTACATCAGACGAATATGATTTTCCTTTAATCACTGCACATTTTCAAGGTGCTGATGTTAAGTTGCTTTCTATTAATACCTTTATTGCTGTTGCTGAAGGTGTTGTTTGCCTTGCTTTTTCTCCATCTCAAACCTTAAGCATCTTCGGAAATGTGGCTCAACAAAATTTCTTGGTTGGCTATGACATTCAACAAAAAACTGTGTCCTTTAAGCCTACTGATTGTAGCAAAGTGACGAATAAACTCAATTTTGGAGAAGCCGCTGTTGTTTCTGGGGATGGTGTTGTGTCAACTCCTTTAGTAAAAAAGGACCCTCcaattttttactatttgacATTGGAAGCCTTTAGTGTTGGAAACAAAAGAGTAGAATTTGGTGGGTCTACGGAGGGTGGTAATGAGGGTAACATCATAATTGATTCAGGTACAACATTGACGCTTTTACCCGACGATGTTTATACAAATTTGGAATCAGCTGTGGTAGAACAAGTGAAACTAGACCGTGTTGATGATCCTAATCAAATATTCAGCCTTTGTTATAGCATCACATCAGATGATTATGATTTTCCTCTAATCACAGCACATTTTGAAGGCGCGGATGTGCAGTTGCATTCTATTAGTACCTTTGTTAAAGTAGGTGATGACATTGTTTGCTTCACTTTTCAGTCATCTAAAATTGGTACCATTTTTGGGAACTTAGCTCAGCAGAATTTGTTGGTTAGTTATGATCTTCAACAAAATATTGTGTCGTTTAAGGCTACAGATTGTTCGAAGTTGTAA 2307 0.3836 MIKQGFSRSSYDSCVYVQKLRGGDYIYLLLYVDDMLIASKSKVEIDELKSKLGKEFETKDLGAAKKILGMEIRRERTNRKLFLSQKGYLERVVERFGMKGAKSVVTPLAPHFRLSGNQSPTIAEDKEYMENVPYASAVGSLMYAMVCTRPDISQAVSVVSRFMANPGKAHWEAVKWILSGFSVELIHRDSPKSPLYNPTQNKYEHIINAARRSFNRANHLNKVSLTTSAAESTVIPDNGEYLMTYSVGTPPFKLYGVADTGSDIVWLQCQPCDPCFNQTTPKFNPSKSSSYKNIPCSSDLCQSVRDSSCNGDNCQYTISYGDQSHSQGDLSLETLTLESTTGRPVSFPKTVIGCGTQNDVSFEGQSSGIVGLGGGPISLITRLGSSIEGKFSYCLLPSSFRGSNTTTKLNFGDAAVVSGAGVVSTPLVNKDSPVFYYLTLESFSVGNKKVLYGGSFLGDSEEGNIIIDSGTTLTLLPPDVYSNLESAVSEAVKLERADSPVPELSLCYSLTSDEYDFPLITAHFQGADVKLLSINTFIAVAEGVVCLAFSPSQTLSIFGNVAQQNFLVGYDIQQKTVSFKPTDCSKVTNKLNFGEAAVVSGDGVVSTPLVKKDPPIFYYLTLEAFSVGNKRVEFGGSTEGGNEGNIIIDSGTTLTLLPDDVYTNLESAVVEQVKLDRVDDPNQIFSLCYSITSDDYDFPLITAHFEGADVQLHSISTFVKVGDDIVCFTFQSSKIGTIFGNLAQQNLLVSYDLQQNIVSFKATDCSKL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01338 768 PANTHER OS07G0603500 PROTEIN-RELATED 179 585 - -
Tsu08g01338 768 PANTHER OS07G0603500 PROTEIN-RELATED 588 766 - -
Tsu08g01338 768 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 646 657 IPR001969 GO:0004190|GO:0006508
Tsu08g01338 768 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 179 585 - -
Tsu08g01338 768 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 588 766 - -
Tsu08g01338 768 Gene3D Acid Proteases 217 413 IPR021109 -
Tsu08g01338 768 ProSiteProfiles Peptidase family A1 domain profile. 241 580 IPR033121 -
Tsu08g01338 768 Gene3D Acid Proteases 591 768 IPR021109 -
Tsu08g01338 768 ProSiteProfiles Peptidase family A1 domain profile. 617 761 IPR033121 -
Tsu08g01338 768 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 3 108 IPR013103 -
Tsu08g01338 768 Pfam Xylanase inhibitor N-terminal 241 413 IPR032861 -
Tsu08g01338 768 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 465 476 IPR001969 GO:0004190|GO:0006508
Tsu08g01338 768 CDD pepsin_A_like_plant 240 584 IPR034161 -
Tsu08g01338 768 Pfam Xylanase inhibitor C-terminal 618 761 IPR032799 -
Tsu08g01338 768 Pfam Xylanase inhibitor C-terminal 436 580 IPR032799 -
Tsu08g01338 768 SUPERFAMILY Acid proteases 234 589 IPR021109 -
Tsu08g01338 768 Gene3D Acid Proteases 418 590 IPR021109 -
Tsu08g01338 768 SUPERFAMILY Acid proteases 591 766 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01338 Tsu-Chr8 15316326 15332413 Dispersed/Wgd