Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01320 ATGGAGTCCTCTGTTGATATCTTACCAGCTAAACGCCCCGATCCAATTGGAATTTCATCTGAGGAAGGATGCAAAAGACGTAAGTTATCAAGTGATAGTTTGCCCAATTCAGCAAATGTGAATGTTGTAGATTATGCAAACCCGTATGCAATTTCAGAGGCTCTAAATCGTTTAGAGAGTGGAAAATTCGGAAGCGTCACAAAGGATATGGAAGCCCTTATAACccgaaaaatgaaaatattgggACCTTACTTTGCAAAGTATCCTACACTTATTGATAAGTTATTGAAGGTGGTGGTGACAAATCATGATGAAGTAACTCACAACTcggaaaataaaaaagttactgGTATGTCACATCAAAATGTCATTGATTTGGATGAGAGGCACAGTGAAAAGGATGTTTTGGCACCAAAAAGAGAAAAGGATGTACCTGCCACACCATGTCCTATTGTTATCATTGATTCAGATGACGAAGATGATACGGATCAAAATTCATTTCTTCCGTTTCATGAAGTTGTGTTGCCACAACCAGTTCCGTCTCCTGCATTAAGAATGACTGGCTATCATGCTTCCAATGCTTACCATGGAGAAAGTGCAGATCTAAAATTTGATATAAGTCTGCCTCCTTATGCTTACCATGGAGAAAGTGCagataaaaaatttgaaacaagCCTGCCTCCTAAAGATAACCCAAGGAAAGATAAAGGTGTTTATGTTGGTGTACATGAGGAAGATGATCAGGCTGATGCTGAAGATGATGGGCTAGATGATATTTGGAGGGAGATGTCCATGGCAATAGAAACTTCTAAAGATGCAGATCCTCAacccgaagaagaagaagacgaagaagatGCTGACTGTGATCATTCTTTCGTTTTAAAAGACGATCTTGGATATGTTTGCCGCGTTTGCGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTTCAATACAAGGTTAAAAGGAGCACAAGGACTTATATGTCCGATTCGTCGAATGCCAGAGATAAAGTTGATGCGTTTGGTGTGAAGATTAAAGAAGATGATCTCGTGGTAACTGATATATCAGCACATCCTCGGCATGCGAATCAAATGAAACCGCACCAAGTCGAAGGCTTCAACTTTCTTGTCAGAAACTTGGCGGGGGACCATCCCGGGGGATGCATCCTGGCTCACGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTAATGCCAGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCAACTTGGAAAAAAGAGTTTCAGACATGGCAAGTCGAAGATATTCCACTTTATGACCTATACACTGTGAAGGCAGACAGTAGACCTCAACAATTGGAGGTGTTAAAACAATGGATGGATAACAAGAGTATCCTTTTCTTAGGATACAAACAGTTTTCTTCCATTGTGATTGATAATAGTAATAACAATGCATCGATATCTTGCCGAGATATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACCGATATGGTACAGTCCCTTGCCAAAGTACTAACACCAAGAAAAGTTGTACTGTCTGGAACCCTTTATCAAAATCATGTCAGGGAGGTATTCAATGTTCTCAATCTGGTGCGGCCGAAGTTTTTAAAGATGGAAACATCTAAGCCTATTGTCCGGCGCATTCAGAGTAGGATCCATATAAGTGGTGTGAAACGCTTCGATGAATTGGTCGAGAATACATTGCAGAAGGACCCAGATTTTAAAAGGAAAGTGGCTGTAATTCATGATTTGCGTGAGATGACCAGCAAAGTTCTTCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTCACTGTGGTGCTCAAACTTACACCTAGACAGAAGCATGAAGTTGAGAAAGTAAGGAAGATATTAAGAAAGTTCAAAATGTCGGCTGTAGGCAGTGCGGTGTATTTGCATCCTAAGTTGAAGCCAATTGCAGATAAATGCGTTGAAAAATCAgttcttcaaaaacaaaaatgcgTTGAAAAATCCATATCGGATACTATGATGGATGAGTTTATAGAGAACCTAGATGTTAGAGATGGGGTCAAATCAAAATTCTTTCGCAATATGCTGAATCTATGTGAATCAGCTGGGGAGAAACTTTTGGTGTTCAGTCAATATCTCTTACCTTTGAAATATTTGGAAAGGTTAGCTGTGAAATGGAAGGGATGGGGTGTCGGAAAAGAAATCTTTGTGATTTCAGGAGATTCAACCGCTGAACAAAGGGAGTATTCCATGGACAAGTTTAACAATACACCCGaggcaaaaatattttttgggtcAATCAAAGCATGTGGTGAGGGTATATCGTTGGTTGGGGCATCCCGTGTGATCATCTTGGATGTTCATTTAAACCCATCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAGGAAAGTCTTTGTGTATCGATTGGTAGCTGCTGATTCTCCAGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCTTTTGAAGTAGAGACTCTTGATGTGAAGGAATGCGGTGATCTGTTTCTGGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGTATAAAAGGTAG 2730 0.3846 MESSVDILPAKRPDPIGISSEEGCKRRKLSSDSLPNSANVNVVDYANPYAISEALNRLESGKFGSVTKDMEALITRKMKILGPYFAKYPTLIDKLLKVVVTNHDEVTHNSENKKVTGMSHQNVIDLDERHSEKDVLAPKREKDVPATPCPIVIIDSDDEDDTDQNSFLPFHEVVLPQPVPSPALRMTGYHASNAYHGESADLKFDISLPPYAYHGESADKKFETSLPPKDNPRKDKGVYVGVHEEDDQADAEDDGLDDIWREMSMAIETSKDADPQPEEEEDEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSDSSNARDKVDAFGVKIKEDDLVVTDISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRPQQLEVLKQWMDNKSILFLGYKQFSSIVIDNSNNNASISCRDILLKVPSILILDEGHTPRNENTDMVQSLAKVLTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQSRIHISGVKRFDELVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKHEVEKVRKILRKFKMSAVGSAVYLHPKLKPIADKCVEKSVLQKQKCVEKSISDTMMDEFIENLDVRDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLAVKWKGWGVGKEIFVISGDSTAEQREYSMDKFNNTPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLVAADSPEEEDHNTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDLFLESPLLGEDVKALYKR 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01320 909 CDD SF2_C_SNF 716 844 - -
Tsu08g01320 909 Gene3D - 630 896 IPR027417 -
Tsu08g01320 909 PANTHER PROTEIN CHROMATIN REMODELING 35 21 909 - -
Tsu08g01320 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 576 IPR027417 -
Tsu08g01320 909 SMART ultradead3 363 573 IPR014001 -
Tsu08g01320 909 SMART helicmild6 748 833 IPR001650 -
Tsu08g01320 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 719 887 IPR001650 -
Tsu08g01320 909 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 909 IPR044567 GO:0080188
Tsu08g01320 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 381 560 IPR014001 -
Tsu08g01320 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 871 IPR027417 -
Tsu08g01320 909 MobiDBLite consensus disorder prediction 218 238 - -
Tsu08g01320 909 MobiDBLite consensus disorder prediction 1 21 - -
Tsu08g01320 909 Pfam Helicase conserved C-terminal domain 724 832 IPR001650 -
Tsu08g01320 909 Pfam SNF2-related domain 387 596 IPR000330 GO:0005524|GO:0140658
Tsu08g01320 909 Gene3D - 334 595 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01320 Tsu-Chr8 15032389 15039707 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu08g01320 SNF2_N 6.1e-19 CL0023