Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01319 ATGGCGGAACACGTGACCGCCACCGTGAACGACGGCGAACAAAAACCACAACAGAACAaacaccacaacaacaacaacaacaacaacaaagataacaagaaagagaagagttCAGATCCAGAGCTATTCTGCTGTCTTCTTCAGCCTCTAACGCCCGACGCTGATCCCCGATACATTGGCATTCGTCGCCTGCTCCTTCATCAGAAGGCTGAGGCTGGAATTCTCCGCCGTAGGGATTGGCGATGCAATGGGAAAACTTACGTCGCATACCGGAATTACATATGCAGGCCTAGGAACTGTGAAAGTCTACGTGCCCCAAGCCTTCAAAGTACTCCAGGAAACAGTGGCCGATGGTTTCCATCTTCAAGTCCACTCCCCCGTTGGTCTGAGGTGGACAGCTGGGGTTCTGGGAGGgATGTCCAAGTTGCAAGTTCAGTATCCAATCATAGATCAAGTTTTGGCTCTGGCTCAACTGCAAGTGATTCTGATCGTCCACGGCATCGTGGGGTTGAGCATGCCTATTCCTTTGTAGGAATGCATTGCATCTTTGACCAGTGCAAAGCCTCTGTTACGGTGTTAAAGTTTGGGCACATGAGTTCTGACCTACTTGCTTATGGAGCATCAGATGGAACCTTGACTGTGTGCAGTGTATCAGAGAAACCTTCAGTCATCAAACAATTAAGTGGCCATTCCAAAGATGTCACAGATTTTGATTTTACATCAAACAATCAGTACATTGCATCGTCTTCGTTGGATAAAACTGTGAGAGTATGGGAGATAGAAAAAGGCATTTGCATACGGGTGATATATGGAGTTTCTTCACAACTGTGTATCCGTTTTCACCCTGTAAATAACAACTTCCTTTCCGTTGGCAATGCAAACAAAGAAATCAATGTATTCAATTTTAGCACTGGAAGGATAATTAACAAGTCGTTATTTGACGCTGAAGTTACCGCTATGGACCATGATCATACTGGTCATCTCATATTTTGTGGAGACGCGCAGGGATGTATATACTCTGTAAATATGAACTCCCACACAGGTATATTATCCCGCTCTCATCGTCATCGAAGTAGCAGCAAACACAGATCTCCCGTAACAACAGTGCAGTATAGGAGTTTCTCTCTGCTGGCCCGAGGACCTGTGTTGTTGACCTGTACTCAGGATGGAAATCTGTCTTTCTTCAGTGTGGCTTTGGAGATAAAAGGTTATTTAACTCTTCGTTGCTCGCTCAAATTAACTCCTCGGATACACAAAATTCAAGCTTCTTTCTGCCCCCTTCTTTCTCTTGAAAAAGGAGAATTCATTGTTGCTGGCAGTGAGGACTCAAATGTCTATTTCTATGATTTAACAAAGCCAAAGCATACATGTGTAAACAAGTTACAGGGTCATCGGTTTCCTGTGATGGGGATTGCTTGGAACCATGGAGAAAACTTTTTGGCTTCCTCTGATTTTTACGGCATAGTAATTGTTTggaagagagaaagaacaaaTCAGAACAATAATACATAG 1512 0.422 MAEHVTATVNDGEQKPQQNKHHNNNNNNNKDNKKEKSSDPELFCCLLQPLTPDADPRYIGIRRLLLHQKAEAGILRRRDWRCNGKTYVAYRNYICRPRNCESLRAPSLQSTPGNSGRWFPSSSPLPRWSEVDSWGSGRDVQVASSVSNHRSSFGSGSTASDSDRPRHRGVEHAYSFVGMHCIFDQCKASVTVLKFGHMSSDLLAYGASDGTLTVCSVSEKPSVIKQLSGHSKDVTDFDFTSNNQYIASSSLDKTVRVWEIEKGICIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEINVFNFSTGRIINKSLFDAEVTAMDHDHTGHLIFCGDAQGCIYSVNMNSHTGILSRSHRHRSSSKHRSPVTTVQYRSFSLLARGPVLLTCTQDGNLSFFSVALEIKGYLTLRCSLKLTPRIHKIQASFCPLLSLEKGEFIVAGSEDSNVYFYDLTKPKHTCVNKLQGHRFPVMGIAWNHGENFLASSDFYGIVIVWKRERTNQNNNT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01319 503 MobiDBLite consensus disorder prediction 10 25 - -
Tsu08g01319 503 MobiDBLite consensus disorder prediction 105 124 - -
Tsu08g01319 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Tsu08g01319 503 SUPERFAMILY WD40 repeat-like 182 494 IPR036322 GO:0005515
Tsu08g01319 503 Gene3D - 278 503 IPR015943 GO:0005515
Tsu08g01319 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 263 - -
Tsu08g01319 503 MobiDBLite consensus disorder prediction 145 160 - -
Tsu08g01319 503 PANTHER WD REPEAT PROTEIN 26-RELATED 24 497 - -
Tsu08g01319 503 MobiDBLite consensus disorder prediction 1 36 - -
Tsu08g01319 503 ProSitePatterns Trp-Asp (WD) repeats signature. 246 260 IPR019775 -
Tsu08g01319 503 Pfam WD domain, G-beta repeat 224 258 IPR001680 GO:0005515
Tsu08g01319 503 Pfam WD domain, G-beta repeat 457 493 IPR001680 GO:0005515
Tsu08g01319 503 Gene3D - 174 277 IPR015943 GO:0005515
Tsu08g01319 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 502 IPR001680 GO:0005515
Tsu08g01319 503 PANTHER WD REPEAT-CONTAINING PROTEIN 13 24 497 - -
Tsu08g01319 503 MobiDBLite consensus disorder prediction 145 166 - -
Tsu08g01319 503 SMART WD40_4 454 493 IPR001680 GO:0005515
Tsu08g01319 503 SMART WD40_4 262 301 IPR001680 GO:0005515
Tsu08g01319 503 SMART WD40_4 304 342 IPR001680 GO:0005515
Tsu08g01319 503 SMART WD40_4 352 396 IPR001680 GO:0005515
Tsu08g01319 503 SMART WD40_4 176 216 IPR001680 GO:0005515
Tsu08g01319 503 SMART WD40_4 220 259 IPR001680 GO:0005515
Tsu08g01319 503 SMART WD40_4 413 449 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01319 Tsu-Chr8 15021647 15030024 Transposed