Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01318 ATGTACATCAAGGAAATTTGCTTGGAAGGTTTCAAATCCTACGCAACTCGAACTGTTGTTCCTGGATTTGATCGTTTCTTCAACGCTATCACTGGTTTGAACGGTTCTGGTAAATCGAATATTCTCGATTCGATTTGTTTTGTTCTTGGTATCACTAATTTGCAACAGGTTCGTGCTTCGAATCTTCAAGAACTTGTTTATAAGCAAGGTCAAGCGGGAATTACTAAGGCTACTGTTTcaattgtgtttgataattctGAAAGGAGTCGTAGTCCTCTTGGATATGAAGGCCATTCCGAGATTACTGTTACAAGAcagATTGTGGTTGGAGGGAGGAACAAATATTTGATTAATGGGAAACTTGCACAACCTAGTCAAGTCCAGAACCTTTTCCATTCCGTGCAACTAAATGTCAACAATCCGCATTTCCTTATAATGCAAGGGCGGATTACTAAGGTTTTAAATATGAAGCCTCCGGAGATATTGTCTATGCTTGAGGAAGCTGCTGGGACAAGAATGTATGAGACAAAGAAAGAGGCTGCTCTAAAAACTCTCGAGAAGAAGCAGAGTAAGGTTGATGAGATCAACAAACTTCTTGATCTGGAGATACTTCCAGCTTTGGAGAAGTTAAGGAAAGAAAGGACGCAGTACATGCAGTGGGCTAATTGCAACGCTGAATTGGATAGACTGAGAAGATTCTGTATTGCTTTTGAGTATGTTCAAGCGGAGACTATTAAAGACAATGCTACTTTTGAGGTGGAACAAGTAAAAGCCAAGATAGCTGAGATTGACGACATTGCTAAGTCAACTATGGTGGATGTAAAGGCAATGGAGACTAAAATAGCTCAGTTGACTGCTGAGAAGGAAGCAAGCATGGGTGGGGAAATGAAATCTCTGTCGGGGACGGTTGATACACTTTCCCAGAGTCTTGTGAAGGAAACATCTGTACTAAATAATAAAGAAGACACTCTGAGGAGTGAAGAAGTCAACAAAGAAAAAATTGTGAGAAATATTGAAGAATTGAAGCAATCTGTAGAAGAGAAGGCCTCTGCCATTAAAAAGGCTGAAGAAGGAGCAGCTGATTTGAAAAATAGAGTTGAGGAGCTCTCAAAGAGCCTGGAGGAGCATGAAAAGGAATACCAGGGCGTTTTAGCTGGCAAGAGCAGTGGTAACGAGGAGAAATGCTTAGAGGATCAACTAGGTGATGCAAAGAAAGAAGTTGGAAGTGCTGAAACAGAATTAAAACAGTTGAAAACCAAAATTAGCCATTGCGAAAAggaattgaaagagaaaaaaaatcaattaaggTCAAAACAGGATGAAGCTACTTCTGTGGAAAATGAGCTGAGAGCTAGAAGGAAGGATGTTGAAAATATCAAAACAGGATTGGAGTCTCTTCCTTATAAAGAGGGTGAGATGGAAGCTTTGCAAAAGGAGCGTGAATCTGAGAGGGATTGTGTGCAAAAGTTGAAGGATGAAATACGCAACATTTCAGCATACCTGGCTAATGTTGAATTTTCATACCATGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAGGGCGTTGTTGCAAAACTCATCAAAGTGAAAGATAGGTCCACAGTGACCGCCCTAGAGGTTACAGCTGGTGGAAAGTTGTACAATGTTGTAGTTGACACAGAAAGTACCGGAAAACAGCTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTATACCTTTGAACAAAATACAACCCTATGTTGTTACCTCAAGAGTTCAAGTTGCCGCTGTTGAATTGGTGGGCAAGGAGAATGCCGAAATTGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAAAGCAATGGAATATGTCTTTGGCTCAACCTTTGTTTGCAAAACTCCAGATGCTGCAAAGAAGGTGGCATTTAGTAGTAATATTCGCACCACCAGTGTCACGCTTGAAGGGGATATTTTTCAGCCAAGCGGTCTTCTTACTGGGGGAAGCCGGAAGGGAAGTGGTGATCTGTTGAGGCAACTTCATGCTGTGGCTGAAGCTGAGTCAAAACTTTCAGTGCATCAGAGTAGGTTATCAAAGATTGAGGAAAAGATCGCAGAGCTTCTTCCTCTtcagaaaaaatttaaagaccTCAAAGCACAACTAGAACTCAAGTCATATGATCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAACGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGACCTTGAAGAAGCAAAATCTGCAGTCAAAGAAAAGCAACTTTTATATGAAAACTGTGTCAAGACTGTTTCATCACTTGAGAAGTCAATCAAAGAACATGACAATAATCGAGAAAGTAGGCTAAAAGGTTTGGAGAAAAAGATAAAGTCGATTAAATCCCAAATGCAGTCATCTTCAAAAGACCTAAAGGGACATGATAATGAAAAGGAGAGGCTTGTAATGGAAATGGAAGCTGTTATTCAGGAGCAAGCTTCCTTGGAGCAACAATTAGCATCCATGAGAACACAGATTACTAATCTTTCCTCAGAAGTAGAAGAACAAAAATCCACAGTTGCTGCTGCAAGGAATAATCTCGATGAAGCTCAGTCAGAGCTAAATGCAGTTCGTCAGAAAATGAAGGAGTGTGACAAGGAAATCAGTGGCATTGTTAAAGAGCAGAAAAAGCTTGAACATAAACTTAGTGAGAGTAATCTTGAAAGGAAGAGGATGGAAAACGAGgTAAAACGAATGGAGATGGAACAGAAAGACTGTTCTGTGAGGGTGGATAAATTGATAGAGAAGCATGCATGGATTGCTTCTGAAAAacagttgtttggtaaaagtgGGACTGATTATGATTTTGCTTCTCGTGATCCTGGTAAAGCAAGGGAAGAACTCGAGAAGCTTCAGGCTGAACAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGATGAGTACAATGACTTGAtgtcaaagaaaaatataattgagAATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAgatgagaaaaagaaagagacaCTAAATGTTACCTGGACCAAAGTGAACACTGACTTTGGATCAATATTTTCTACACTATTACCGGGTACAATGGCTAAGTTGGAACCTCCAGAAGGATGCAGCTTTCTCGATGGTCTCGAGGTTCGTGTTGCATTTGGAAGTGTATGGAAACAGTCATTGTCTGAACTGAGTGGAGGTCAGCGATCATTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTTTTTAAACCTGCTCCACTTTACATCTTGGACGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAAGATGATAAAAAATCACTTTCCACACTCCCAGTTTATTGTGGTGTCACTAAAGGAAGGCATGTTCAATAATGCAAACGTTCTTTTCCGAACAAAATTTGTAGACGGTGTTTCAACCGTTCAGCGAACTGTGGCTAAGCAAAACAAGTGA 3528 0.3909 MYIKEICLEGFKSYATRTVVPGFDRFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSERSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDLEILPALEKLRKERTQYMQWANCNAELDRLRRFCIAFEYVQAETIKDNATFEVEQVKAKIAEIDDIAKSTMVDVKAMETKIAQLTAEKEASMGGEMKSLSGTVDTLSQSLVKETSVLNNKEDTLRSEEVNKEKIVRNIEELKQSVEEKASAIKKAEEGAADLKNRVEELSKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLGDAKKEVGSAETELKQLKTKISHCEKELKEKKNQLRSKQDEATSVENELRARRKDVENIKTGLESLPYKEGEMEALQKERESERDCVQKLKDEIRNISAYLANVEFSYHDPVKNFDRSKVKGVVAKLIKVKDRSTVTALEVTAGGKLYNVVVDTESTGKQLLQNGNLRRRVTIIPLNKIQPYVVTSRVQVAAVELVGKENAEIALSLVGYEEELKKAMEYVFGSTFVCKTPDAAKKVAFSSNIRTTSVTLEGDIFQPSGLLTGGSRKGSGDLLRQLHAVAEAESKLSVHQSRLSKIEEKIAELLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQDLEEAKSAVKEKQLLYENCVKTVSSLEKSIKEHDNNRESRLKGLEKKIKSIKSQMQSSSKDLKGHDNEKERLVMEMEAVIQEQASLEQQLASMRTQITNLSSEVEEQKSTVAAARNNLDEAQSELNAVRQKMKECDKEISGIVKEQKKLEHKLSESNLERKRMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQLFGKSGTDYDFASRDPGKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNTDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGKMIKNHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAKQNK 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01318 1175 Coils Coil 736 763 - -
Tsu08g01318 1175 Gene3D - 995 1175 IPR027417 -
Tsu08g01318 1175 Coils Coil 178 198 - -
Tsu08g01318 1175 PIRSF SMC 1 1156 IPR024704 GO:0005524|GO:0016887
Tsu08g01318 1175 Coils Coil 982 1026 - -
Tsu08g01318 1175 Coils Coil 317 386 - -
Tsu08g01318 1175 Coils Coil 789 886 - -
Tsu08g01318 1175 Gene3D - 784 948 - -
Tsu08g01318 1175 Coils Coil 473 493 - -
Tsu08g01318 1175 SUPERFAMILY Smc hinge domain 477 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu08g01318 1175 Coils Coil 894 928 - -
Tsu08g01318 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 1173 - -
Tsu08g01318 1175 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu08g01318 1175 Gene3D - 1 201 IPR027417 -
Tsu08g01318 1175 Gene3D - 415 590 - -
Tsu08g01318 1175 MobiDBLite consensus disorder prediction 429 448 - -
Tsu08g01318 1175 Coils Coil 679 699 - -
Tsu08g01318 1175 Coils Coil 393 448 - -
Tsu08g01318 1175 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu08g01318 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
Tsu08g01318 1175 Gene3D - 591 666 - -
Tsu08g01318 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 1173 - -
Tsu08g01318 1175 SUPERFAMILY Tropomyosin 676 888 - -
Tsu08g01318 1175 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Tsu08g01318 1175 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01318 Tsu-Chr8 15006503 15019650 Dispersed/Transposed