Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01317 atggagTATGAGAAAAAAGGTGAAGGGATTGTAAAGGTTGAACCAAAACCAAGTAATGGTTTCACTTCAAAAGCTATTGATTTATTAGAGAAGCTTATTGTTAAGTTATTTTATGATTCTTCACTTCCTCATCACTGGCTTGCTGGTAATTTTGCACCTGTTAAAGATGAGACACCTCCTGTTAAGGATCTTCCTGTCAATGGCCACCTTCCGGATTGCTTGAATGGAGAGTTTGTTAGAGTGGGACCCAATCCTAAGTTTGCTCCCGTGGCTGGATATCACTGGTTTGACGGAGATGGAATGATTCATGGTTTGCGTATCAAAGATGGAAAAGCTACATATGTTTCCCGCTTTGTGCAAACTTCTCGTCTTAAACAAGAAGAATACTTTGGAGGCTCTAAATTTATGAAGATTGGAGATCTCAAAGGTCTATTCGGACTGTTAATGGTTAACATGCAATTGTTGCGAGCTAAATTGAAAGTAGTGGACGTTTCTTATGGACAAGGAACAGCTAATACTGCTCTTGTATATCACCATCAGAAGCTTCTTGCACTCTCAGAAGGAGACAAACCTTATGCTATTAAGGTTTTTGAAGATGGTGATTTGCAGACACTTGGCCTGCTAGATTATGACAAGAGATTGGGCCATAACTTCACTGCTCATCCAAAAGTTGACCCATTTACTGGAGAGATGTTTACATTTGGATATTCACATACACCACCATATATCACTTACAGAGTAGTTTCAAAGGATGGTTTTATGCATGATCCTGTTCCCATAACAGTATCAGATCCAATCATGATGCACGACTTTGCCATCACagaaaattattcaatatttaTGGATCTTCCTCTGTACTTTAGGCCTAAGGAAATGGTGAAGAATAAGACattgatattttcttttgattcaACCAAGAAAGCTCGTTTTGGTGTCCTACCTCGATATGCTAAGGATGAGAAGCTTATTAGATGGTTTGAACTACCAAACTGCTTCATATTCCACAATGCCAATGCTTGGGAGGAGGAGGATGAAGTTGTCTTGATCACGTGCCGCCTGGAGAATCCAGATTTGGACCAGGTCAACGGGCCCGTCAAGGAAAAGcttgaaaatttctcaaatgAGCTGTATGAAATGAGATTTAACATGAAAACCGGCGAAGCTTCTCAAAAGAAACTATCAGCATCTGCTGTGGATTTCCCTAGGGTGAATGAAAGCTACACTGGCAGGAAACAACAATATGTGTACGGAACCGTATTAGACAGCATTGCTAAAGTTACTGGgattattaaatttgatttgCATGCCAAACCGGATTTGGGAAAAACTAAGCTTGAAGTTGGAGGAAATGTTCAAGGTCTCTATGACTTGGGACCAGGAAGATTTGGCTCGGAGGCTATTTTTGTTCCACGCGTCCCTGGCACTGATTCTGAAGAAGATGATGGATACTTGATCTTTTTTGTGCATGATGAGAATACCAGGAAATCATTCGTGCATGTAATCGATGCAAAAACAATGTCAGCAGATCCTGTTGCAGTTGTAGAATTGCCTCAAAGAGTTCCATATGGTTTCCATGCATTCTTTGTGACAGAGGACCAACTACAAGAACAGGCTAAATTGTAA 1623 0.39 MEYEKKGEGIVKVEPKPSNGFTSKAIDLLEKLIVKLFYDSSLPHHWLAGNFAPVKDETPPVKDLPVNGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVQTSRLKQEEYFGGSKFMKIGDLKGLFGLLMVNMQLLRAKLKVVDVSYGQGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGLLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTPPYITYRVVSKDGFMHDPVPITVSDPIMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDEKLIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDQVNGPVKEKLENFSNELYEMRFNMKTGEASQKKLSASAVDFPRVNESYTGRKQQYVYGTVLDSIAKVTGIIKFDLHAKPDLGKTKLEVGGNVQGLYDLGPGRFGSEAIFVPRVPGTDSEEDDGYLIFFVHDENTRKSFVHVIDAKTMSADPVAVVELPQRVPYGFHAFFVTEDQLQEQAKL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01317 540 PANTHER BETA-CAROTENE DIOXYGENASE 6 536 IPR004294 GO:0016702
Tsu08g01317 540 Pfam Retinal pigment epithelial membrane protein 51 529 IPR004294 GO:0016702
Tsu08g01317 540 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 1-3 6 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01317 Tsu-Chr8 14980929 14987962 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01317 08 14980929 14987962 Tsu08g01317 08 14980929 14987962 ECH