Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01315 ATGCCAGGGAAACCAGAAACCGATGATATGGGAGTAAAGCATAGTGAGTTGCCATCTTCTATTTACTCTCATCAGCCTTGGTGGCTTGAAAACGGCAACAAATCATCCTCAGTTGATCAGCTAAATGGTTCAATCATGAACGGTGTCacatattcagaggctaatGAAAGACAGCATTTGGTTTCGCCTTCACTTTCTGTAACTGATAAGTCAGGTGGGGACGTTGCCAAGGAGCAGCAAAACATCAAACACGGCCTGTCCTCAGCTCCATTTACCATGGACAAACACCTTGATGGTCATTCAATTGTTTTAACATCCCCTTATTCAAATGAGTTTGGTCAAATCTTGTCTACTTATGGACAACAAGTTATGATGAATCCTCAGCTATACCAAATGCATCGTGCTAGAGTGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCGCGTGCTAAGGCTGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCATATCTCCACGAATCCCGTCACCTACATGCTTTGAGAAGGGCAAGGGGAAATGGCGGTCGCTTTCTCAATACAAAGAAGCTCGAACATAACGATTCTCACGCAGCTCTAGAAAAAGGCAACAATACTGGTGCTACATTGGTTACCAACAAAGAGAATCAAGGCTCATCTAATGCGTCGCAGTCTGTGCACAAAATGCAGGGTTTCAGCATCGGTTACCGTGCTGGAAATGGCTTTACAGCTCTATGTCATTCACAGGCAAATGGAAAACAGGAGAGTGACTTCTTTGGTAAAGAGAGGGAATCAAATGGTGGTATCAAATGA 861 0.4239 MPGKPETDDMGVKHSELPSSIYSHQPWWLENGNKSSSVDQLNGSIMNGVTYSEANERQHLVSPSLSVTDKSGGDVAKEQQNIKHGLSSAPFTMDKHLDGHSIVLTSPYSNEFGQILSTYGQQVMMNPQLYQMHRARVLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGNGGRFLNTKKLEHNDSHAALEKGNNTGATLVTNKENQGSSNASQSVHKMQGFSIGYRAGNGFTALCHSQANGKQESDFFGKERESNGGIK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01315 286 ProSitePatterns NF-YA/HAP2 subunit signature. 149 169 IPR018362 GO:0003677|GO:0016602
Tsu08g01315 286 SMART cbf3 143 204 IPR001289 GO:0003700|GO:0006355
Tsu08g01315 286 MobiDBLite consensus disorder prediction 216 240 - -
Tsu08g01315 286 Gene3D - 144 205 - -
Tsu08g01315 286 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 42 253 - -
Tsu08g01315 286 MobiDBLite consensus disorder prediction 214 240 - -
Tsu08g01315 286 PRINTS CCAAT-binding transcription factor subunit B signature 147 169 IPR001289 GO:0003700|GO:0006355
Tsu08g01315 286 PRINTS CCAAT-binding transcription factor subunit B signature 178 201 IPR001289 GO:0003700|GO:0006355
Tsu08g01315 286 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 146 201 IPR001289 GO:0003700|GO:0006355
Tsu08g01315 286 ProSiteProfiles NF-YA/HAP2 family profile. 144 204 IPR001289 GO:0003700|GO:0006355
Tsu08g01315 286 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 42 253 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01315 Tsu-Chr8 14961260 14965904 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tsu08g01315 CBFB_NFYA 8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01315 08 14961260 14965904 Tsu08g01315 08 14961260 14965904 ECH