Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01313 ATGGAGTCAGAAAGAGAAGCTGGAGGAAAACCAATGACAGCATTGAGTGCTCAAATATGCAAGATATGTGCTGAAAATGTCGGCAAGACTTACGATGGTGAACCATTCATTGCGTGCCATGTTTGTGCTTTTCCTGTTTGTAGGCTATGCTACGAGTATGAAAGGAAGGAGGGGGATCGGTCTTGTCCTCAGTGTAAAACTCGGTACAAGAGGCATAAAGGAAGTCCTGCAATTATTGGCGATAGTGAAGAATATGATGGTGCTAGTGACTTCAATTATGATTTggaaaaccaaaaccaaaagcAGAAGATTTCAGACCGCATGTTGGGGTGGGAATTGACACTCGGACGACCAGGAGAGCTTGGCGGTACAAATTATGATAAGGAAGTTTCGCGCAACCATATTCCACAGCTGTCTAGTGGACAAGAGTTGTCTGGAGAGTTTTCTGCAGCTTCACCTGAGAGGCTCACAATGTTATCTCCTGTAGGTGGTGGCGGGAAGCGCATCCACAGTCTTCCATATTCATCCGATGTTAATCAATTTCAAAATATGAGAGGTGTGGACGCAGGATTGGGCAATGTAGCGTGGAAAGAAAGAGTTGACGGCTGGAAGATGAAGTCGGAAAAGAGTGTTGCTCCAACAATGAGCACAGGCCTAGCTGCTTCTGAAAGAGGGACTGGAGATATGGATGCAAGATCTGATGTGCTTATTGATGATTCCTTGTTGAATGATGAAGCTCGACAACCTCTTTCCAGGAAGGTTTCTATTCCGTCATCTAGGATAAATCCATACCGCATGGTCATTGTTCTGCGACTGGTTGTCCTTTGCATTTTCTTGCATTATCGAATAACAAATCCAGTGCGCAATGCACATGCGTTGTGGTTGGTATCAGTTATATGTGAGATTTGGTTTGCCATATCCTGGATATTGGATCAATTCCCTAAGTGGCTTCCTGTCAACCGTGAAACGTATCTCGACAGACTTGCACTGAGATATGATCGGGAAGGAGAACCATCTCAGCTAGCGGCTGTTGACATTTTTGTCAGCACTGTCGACCCGTTAAAGGAGCCTCCACTTGTGACTGCAAATACTGTGCTATCTATTCTTGCAGTTGACTACCCTGTGGATAAAGTCTCCTGCTATGTCTCTGACGATGGTGCCGCTATGTTGACATTTGAAGCTCTTGCCGAGACATCAGAGTTCGCTAGAAAATGGGTTCCTTTTACCAAGAAGTATAATATTGAACCCCGTGCACCTGAGTGGTATTTTGCCCAGAAGATTGACTACTTGAAGGATAAGGTTGAAACGTCATTTGTCAAGGATCGTAGAGCAATGAAGAGAGAATACGAAGAATTTAAAATTCGTATTAATAGACTTGTTGCAAAGGCAACAAAAGTTCCCGAAGAAGGGTGGGTAATGCAAGATGGTACGCCATGGCCTGGAAATAACGTAAGAGATCATCCAGGAATGATTCAGGTTTTCTTAGGCCAAAGTGGAGGACTTGACACTGACGGAAATGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATGCACTTGTTCGAGTATCTGGTGTCCTTACTAATGGACCGTTCATATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCAATAAGGGAAGCTATGTGCTTTATGATGGATCCTAATCTTGGTAAACATGTTTGCTATGTCCAGTTTCCGCAGAGGTTTGATGGTATTGATAGGAATGATCGATATGCCAATCGTAATACTGTTTTCTTCGATATAAATTTGAGAGGTTTGGATGGTATTCAAGGTCCTGTTTATGTTGGTACTGGATGTGTCTTCAATAGAACGGCTTTATATGGTAATGAACCACCTCTAAAACCGAAGCATAAAAAGAAGAGTTCAAAATTTAGTAAGAAAGGATCAGACAAGAAAATGTCTAGCAGGCGTACTGACTCAACTGTGCCCTTCTACAGTCTGGGGGATATGGAAGGTGTAGAAGGTAGTGGATTTTCAGGGACTGGATTTTCAGGTAGTGGATTTGATGATGAGAAAACACTACTTCCGGCACAAAAGAGCCTTGATATGCTTCAGAATAGATTCGGTCAGtcaattgtttttgttgtttcaacGGAGATGGAGAATGGTGGTGTTCCTCAGTCTGCGACTCCGGAAACTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGTGGTTATGAGGATAAATCAGAATGGGGAACAGAGATAGGATGGATTTATGGTTCCGTCACGGAAGATATTCTTACTGGATTTAAGATGCACGCCCGTGGTTGGCGGTCTATATACTGCATGCCTAAGCGGCCAGCATTTAAAGGTTCCGCTCCTATCAATCTTTCGGATCGTCTAAACCAAGTGCTTCGATGGGCTTTAGGTTCTGTTGAAATTCTCTTTAGCCGACATTGTCCTATCTGGTATGGTTATGGTGGAAGGCTAAAGTGGCTTGAGAGGTTCGCATATATAAACACCACAATCTATCCGGTTACTGCCATTCCCCTTCTTATGTATTGTACCTTGCCAGCTGTTTGTCTTCTTACTAACAAGTTCATCATTCCACAgATTAGTAACCTAGCAAGTATATGGTTTATCTCCCTCTTTCTTTCAATCTTCGCAACTGGAATCCTCGAGATGAGATGGAGCGGTGTTGGAATCGATGAGTGGTGGAGAAACGAACAATTTTGGGTTATCGGTGGCGTGTCAGCACATCTTTTTGCTGTGTTCCAAGGTCTACTAAAAGTGCTTGCTGGAATCGACACAAACTTCACCGTCACCTCAAAAGCCTCGGATGAAGACGGAGATTCTGCAGAACTATACATGTTCAAATGGACAACGCTTCTCATTCCACCAACAACACTTCTCATAATAAACTTGGTAGGAGTTGTTGCCGGTATTTCCTATGCTATTAACAGCGGTTACCAATCGTGGGGTCCTCTCTTTGGTAAACTTTTCTTTGCATTTTGGGTTATTGTTCATCTTTACCCTTTCCTTAAAGGTCTCATGGGACGCCAGAATCGAACACCGACCATTGTTGTGGTCTGGTCGATTCTTCTTGCGTCGATTTTCTCTCTATTATGGGTTCGAGTTGATCCGTTTACCACAAGAGTCACTGGTCCTAAAGCTGAGGTGTGTGGAATTAACTGCtaa 3216 0.4285 MESEREAGGKPMTALSAQICKICAENVGKTYDGEPFIACHVCAFPVCRLCYEYERKEGDRSCPQCKTRYKRHKGSPAIIGDSEEYDGASDFNYDLENQNQKQKISDRMLGWELTLGRPGELGGTNYDKEVSRNHIPQLSSGQELSGEFSAASPERLTMLSPVGGGGKRIHSLPYSSDVNQFQNMRGVDAGLGNVAWKERVDGWKMKSEKSVAPTMSTGLAASERGTGDMDARSDVLIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVVLCIFLHYRITNPVRNAHALWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFTKKYNIEPRAPEWYFAQKIDYLKDKVETSFVKDRRAMKREYEEFKIRINRLVAKATKVPEEGWVMQDGTPWPGNNVRDHPGMIQVFLGQSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNGPFILNLDCDHYINNSKAIREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGNEPPLKPKHKKKSSKFSKKGSDKKMSSRRTDSTVPFYSLGDMEGVEGSGFSGTGFSGSGFDDEKTLLPAQKSLDMLQNRFGQSIVFVVSTEMENGGVPQSATPETLLKEAIHVISCGYEDKSEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYINTTIYPVTAIPLLMYCTLPAVCLLTNKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDSAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPKAEVCGINC 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01313 1071 MobiDBLite consensus disorder prediction 636 666 - -
Tsu08g01313 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Tsu08g01313 1071 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 497 634 IPR029044 -
Tsu08g01313 1071 Coils Coil 442 462 - -
Tsu08g01313 1071 Pfam Cellulose synthase 344 1065 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tsu08g01313 1071 SUPERFAMILY RING/U-box 5 93 - -
Tsu08g01313 1071 SUPERFAMILY Nucleotide-diphospho-sugar transferases 358 884 IPR029044 -
Tsu08g01313 1071 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Tsu08g01313 1071 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 1071 - -
Tsu08g01313 1071 PANTHER CELLULOSE SYNTHASE 5 1071 - -
Tsu08g01313 1071 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01313 Tsu-Chr8 14936170 14943684 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01313 08 14936170 14943684 Tsu08g01313 08 14936170 14943684 ECH
Tsu08g01313 08 14936170 14943684 Tsu03g00477 03 4028948 4037441 PCT