Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01310 ATGAACTTGCTCTTTAGCAACCTTTCGGTTTCGCCTCTTATTTTGGACATTATCTCTGGTGCGAATCTCTTTGGCAATTGTTTAACTGGTTTCTTTTCTGGTCTTAAAGGCAACATGTGCTCCACCAAATCTTTGCTTAAACCTTACATTTCATTATTGAAGCCAAAGAAACACTCTTTCATTGTTCCAGATCTCATTCTTCCATTGTTAACTGAGGCACGTGTGGTGGCCCggagaaatcaaaatcaagttcttcaatttcgTGTTTTTTTATTGGAATTTGCTTCTAACAATTATGTTGAAGGTTTTGAGTTGCTTTTAGATAAAGTAGGAGCTTCTTCGATTAACAAGGCGGGGATTTGGTACGGTCGGCAATATGGGTGTAAGCAGATTGTTCGTGACCATAAAACATCTTTGATGGTCGCTGCTACTTTTGGTAGTATTGATGTTATAAAGCTTATACTTTTGTATCAGGAAGCCGATGTGAATTTTGCTTGTGGGGTGAGTAAAATGACTGCCCTTCATTGTGCTGCTTTTGGTGGGTCTGTTAATGTTGTTGATGCTGTGAGACTTCTTATAGAGGCTGGTGCTGATGTTAATTGTGTCGATGCCAATGGAAATCGGCCTGTTGATGTCATTGTTGTTCCTCCCATGCTGCAAAGCATGAAAGCGGTTCTTGAGGAACTTCTTTCCGATAATGCCTATGATATTGGTTCTATTGGTGACTTCTCTGTTTCGGTGTCCGTTAATTCTTCTAGTTCTGGTTTGCTTGAAAATGGGATGACTTTGCCATACTCTCCCTCAGTGTCACCACCATCTCCTGTAGTGGATTTGAAATTTACCAAGAAGAAGGAATATCCAGTTGATCCATCACTTCCTGGTATAAAAAACGGCATATATGCAAGTGATGAGTTTCGAATGTATTCTTTCAAGGTCCGTCTTTGTTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAATGCTCGGAGGAGAGACCCCAGGAAGTTCCATTACACCTGTGTGCCTTGCCCTGAATTTAAGATAGGGCCATGTAGGCGTGGAGATATGTGCGAATTTGCTCATGGAGTATTTGAAACCTGGCTACACCCAGATCTGTATCGAACACGCTTCTGTAAAGACAGAACTAGTTGTAATCgaagggtgtgtttttttgcTCATATTGCAGAGGAATTAAGGCCAGTGAATCCTTCAACTGGATCTGCGGTTTCTTCACCATGTTCATCCGGATCTGCTCTTAATGTGATGGACATAACTGCTGCAATGAATCTTTTGGCTGGTTCACCTGTGTCAGTCTCTTCTATGTCTCCATCTCATTTTGCCCAGCCGATGTCTGCTCATGGAAATGGCATGTCATTCTCAAGTGTTGCCTTGGCACAACAAAATGTTCCAACTCTTCATATACCAGGAACTAATTTTCAATCTAGTCGATCGAGAAGAGCTCCAAATCCATCAAATCTTGGAGAGCTCTTTTCTGCTGAAGTTTTGTCATCTCCACAGTCTTCTGACCAATCAATGGCTTATGTTTTTTCACCTTCACGTAAACCAGCTGCTATGAATCATTTTAACCAGCTTCAAAACATGTTATTACCTATAAATTCTAATACGTTGTCTCCAAAATATGTTGAGCATCCTATGTTACAGGCTTCATTTGGCGTCCCCTTTTCAGGTACGATGTCACCTAGAAGTATTGAACCAATCTCCCCAATGAGCCCTCTAATGTCTCCATTTGCTCAGCGCGAGAAACAACAGCAACACCTGCGGAGTATTAGTTCAAGGGACCTTGGTTCCAACATCCCTGCCTCAGTTGTTGGATCCCCTACAAACCCATGGTCTAAGTGGGAATCTCCTAATGGGAAGGTTGATTGGTCGGTAAATAGAGATGAACTAAGTCACCAAATGCGCTGCAGTTCCTCATTTGAACATAAAATCATTGCGGAAGAGTCTGATTTATCATGGGTCCAATCCCTAGTGAAGGTTTCTTCACCTGAGATGGTTAAGGAGAAGTTTGCATCTTCTGGCCCTATTGCATCTGCTGATGGATTGAATTCCAATTCGCGAATTGAACCTATTCATCCTTCCGTTTCAGGAGCTTGGCTTGAGCAATTGAAACTGGATCAACTTGTTGTCTAA 2172 0.4116 MNLLFSNLSVSPLILDIISGANLFGNCLTGFFSGLKGNMCSTKSLLKPYISLLKPKKHSFIVPDLILPLLTEARVVARRNQNQVLQFRVFLLEFASNNYVEGFELLLDKVGASSINKAGIWYGRQYGCKQIVRDHKTSLMVAATFGSIDVIKLILLYQEADVNFACGVSKMTALHCAAFGGSVNVVDAVRLLIEAGADVNCVDANGNRPVDVIVVPPMLQSMKAVLEELLSDNAYDIGSIGDFSVSVSVNSSSSGLLENGMTLPYSPSVSPPSPVVDLKFTKKKEYPVDPSLPGIKNGIYASDEFRMYSFKVRLCSRAYSHDWTECPFVHPGENARRRDPRKFHYTCVPCPEFKIGPCRRGDMCEFAHGVFETWLHPDLYRTRFCKDRTSCNRRVCFFAHIAEELRPVNPSTGSAVSSPCSSGSALNVMDITAAMNLLAGSPVSVSSMSPSHFAQPMSAHGNGMSFSSVALAQQNVPTLHIPGTNFQSSRSRRAPNPSNLGELFSAEVLSSPQSSDQSMAYVFSPSRKPAAMNHFNQLQNMLLPINSNTLSPKYVEHPMLQASFGVPFSGTMSPRSIEPISPMSPLMSPFAQREKQQQHLRSISSRDLGSNIPASVVGSPTNPWSKWESPNGKVDWSVNRDELSHQMRCSSSFEHKIIAEESDLSWVQSLVKVSSPEMVKEKFASSGPIASADGLNSNSRIEPIHPSVSGAWLEQLKLDQLVV 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01310 723 MobiDBLite consensus disorder prediction 597 629 - -
Tsu08g01310 723 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 89 492 - -
Tsu08g01310 723 Pfam Ankyrin repeats (3 copies) 95 203 IPR002110 GO:0005515
Tsu08g01310 723 Gene3D - 344 407 - -
Tsu08g01310 723 ProSiteProfiles Ankyrin repeat region circular profile. 169 203 - -
Tsu08g01310 723 SMART c3hfinal6 379 402 IPR000571 GO:0046872
Tsu08g01310 723 SMART c3hfinal6 344 370 IPR000571 GO:0046872
Tsu08g01310 723 Gene3D - 76 233 IPR036770 -
Tsu08g01310 723 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 496 721 - -
Tsu08g01310 723 MobiDBLite consensus disorder prediction 597 628 - -
Tsu08g01310 723 ProSiteProfiles Zinc finger C3H1-type profile. 349 371 IPR000571 GO:0046872
Tsu08g01310 723 SUPERFAMILY Ankyrin repeat 91 214 IPR036770 -
Tsu08g01310 723 SMART ANK_2a 169 201 IPR002110 GO:0005515
Tsu08g01310 723 SMART ANK_2a 86 117 IPR002110 GO:0005515
Tsu08g01310 723 SMART ANK_2a 134 164 IPR002110 GO:0005515
Tsu08g01310 723 PANTHER UNKEMPT FAMILY MEMBER 496 721 IPR045234 -
Tsu08g01310 723 PANTHER UNKEMPT FAMILY MEMBER 89 492 IPR045234 -
Tsu08g01310 723 ProSiteProfiles Ankyrin repeat profile. 169 204 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01310 Tsu-Chr8 14878705 14882587 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g01310 Ank_2 1.4e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01310 08 14878705 14882587 Tsu03g00496 03 4205088 4207120 PCT