Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01309 ATGAATGAGAATGGCAATGCTAATGAACTCAACAAGAAGTGGAAATTTCCTTTCTTAGTTTTCTTCAGTGATGCAAGACTTATTTTCAAGTTGGATGCACTTTCAAAAGAGATATTAGGGATTGCATTACCATCTGCATTGGCTGTTGCTGCTGATCCTATTGCTTCTCTCATTGACACAGCATTCATAGGCCATTTGgGAGCTGTGGAACTTGCTGCTGCAGGAGTTTCCATTGCATTGTTCAACCAAGCTTCAAAGATTACCATATTTCCTCTTGTTAGTATTACAACATCATTTGTAGCTGAGGAAGATACTATAAAAAGAATGAATGCAGCTGAAATTGATAAGACTAAGTTAAGATTAGCTGAAGTAACACCTAAGGATGATGATTTGCTTCAAGACATAGAGAAAGGGACCCCTAAAGAGAATATTAAGGCTCCAAATGGAACAGTGGCTAGAAGCTGTGGACATGATGAGGATGATAAGAAACATGCTGATAAGACCAATGGAGTTGATGCTAATACAAATCTATGCAAGTCACACTCAATTCCAAAGATTGATAAAAAGAGACACATTGCTTCAGCATCAACAGCACTAATTTTTGGCTTAATTCTTGGCCTCATTCAAGCTTCAGTCCTTATATTTGGAGCCAAAATTCTATTAGGTGTCATGGGTGTGAGACatGGTTCTCCAATGCTAAAACCAGCAATGAAGTATTTAATATATAGATCATTTGGTGCTCCTGCTGTTCTTCTCTCATTGGCAATGCAAGGAATATTTCGAGGATTTAAGGACACAACAACTCCTTTATATGTCATCCTTGCGGGGTATTCATTAAATGTGTTATTGGAGCCgttacttatatttaaattgaaaatgggCATAAAAGGAGCAGCCATTGCACATGTTCTTTCCCAGTACATGATGGCATTTACCCTCTTCTTCATATTAATGAAAAAGGTCTATCTTATGCCTCCAAGAATAAAGGATCTACAAATTTTCCGGTTTCTTAGAAATGGAGGTCTGTTGATGACAAAGGTAATAGCAGTGACATTCTGTGTGACTTTAGCAGCTTCCTTGGCTGCAAGGTTAGGTCCAATTCCTATGGCTGCCTTTCAACCTTGCCTACAAATTTGGTTGGCAGCTTCCCTTTTTGCAGATGGTTTGGCTATAGCTGTTCAGGCAATCCTAGCCGGTTCCTTTGCCGAGAAAGACTATAATAGAACAACAGCAGCTGCAACAAGGACTCTACAATTCGGTTTCATTTTAGGGTTGGGGCTCTCTCTTATTGTTGGAGTTGGATTATACTTTGGAGCTGGAATCTTTTCCAAAAATGCTCAAGTTATACACTATATCCGAGTAGCCGTCCCGATTGTAGCTGCTACACAACCAATCAATACATTATCCTTTGTCTTTGATGGTGAGCAATCATTATGTTGGAATATGGATTGCATTATCCATTTATATGACTCTTCGAATGTTGGCTGGTGTATGGAGGATGGGAACAGGAACAGGACCATGGAGCTATCTCAGAAGCCAATAATTTTACTGTTCTTAGAACACTAA 1566 0.3857 MNENGNANELNKKWKFPFLVFFSDARLIFKLDALSKEILGIALPSALAVAADPIASLIDTAFIGHLGAVELAAAGVSIALFNQASKITIFPLVSITTSFVAEEDTIKRMNAAEIDKTKLRLAEVTPKDDDLLQDIEKGTPKENIKAPNGTVARSCGHDEDDKKHADKTNGVDANTNLCKSHSIPKIDKKRHIASASTALIFGLILGLIQASVLIFGAKILLGVMGVRHGSPMLKPAMKYLIYRSFGAPAVLLSLAMQGIFRGFKDTTTPLYVILAGYSLNVLLEPLLIFKLKMGIKGAAIAHVLSQYMMAFTLFFILMKKVYLMPPRIKDLQIFRFLRNGGLLMTKVIAVTFCVTLAASLAARLGPIPMAAFQPCLQIWLAASLFADGLAIAVQAILAGSFAEKDYNRTTAAATRTLQFGFILGLGLSLIVGVGLYFGAGIFSKNAQVIHYIRVAVPIVAATQPINTLSFVFDGEQSLCWNMDCIIHLYDSSNVGWCMEDGNRNRTMELSQKPIILLFLEH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01309 521 TIGRFAM matE: MATE efflux family protein 44 474 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu08g01309 521 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 9 475 IPR044644 -
Tsu08g01309 521 MobiDBLite consensus disorder prediction 142 168 - -
Tsu08g01309 521 MobiDBLite consensus disorder prediction 154 168 - -
Tsu08g01309 521 CDD MATE_DinF_like 36 474 IPR044644 -
Tsu08g01309 521 Pfam MatE 346 474 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu08g01309 521 Pfam MatE 194 285 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu08g01309 521 PANTHER MATE EFFLUX FAMILY PROTEIN 9 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01309 Tsu-Chr8 14870657 14878043 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01309 08 14870657 14878043 Tsu08g01309 08 14870657 14878043 ECH
Tsu08g01309 08 14870657 14878043 Tsu03g00502 03 4244688 4249892 PCT