Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00887 ATGGAAGGGTTAGCTCCTAATTCATGTCCAAGACAAGGATTAGAGAAGAAAGCAAGACCACAAGAGCAAATAAATTGTCCAAGATGCAattcaacaaacacaaaattttgtTATTACAACAATTATAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGATCAAGaaagaacaagaaaataatCAATCCTTCATCAACAAAAATTCCTGACCTAAATCCACCAACCCTAGTTCAAGTCTCACCTCTATCTAATTCTCAAAACCCTAAAATGCAAGGAGGTCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAActatcatcataatcatcatggTATGTCCTCATCATATATTGAgatgcataataataataataataataataatgaatcaTCTTCTTCAGCTCTTGATCTACTTAGGTCTAGCATGGCATCTAGAGGCTTAAATCCTtatgctaataataataatactttgATGCCAAACTCAAATACTATTTATCCAAGTGGATTTCCCATGCAAGAAGTTAAACCTAGTCTTGGTTTTTCAATTGATGGAATTAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGTGGTGGAAGACTTTTGTTCCCTTTTGGAGATGTTAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGAACAAGGAAATTCAACTGGATTTTGGAATGGAATGATTGGTGAAGGATCATGGTAa 795 0.3145 MEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIINPSSTKIPDLNPPTLVQVSPLSNSQNPKMQGGQDLNLAFPSMENYHHNHHGMSSSYIEMHNNNNNNNNESSSSALDLLRSSMASRGLNPYANNNNTLMPNSNTIYPSGFPMQEVKPSLGFSIDGINGNRSYDHVQVQEGGGGRLLFPFGDVNKQLSTSGVEVEHNKEQGNSTGFWNGMIGEGSW 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00887 264 MobiDBLite consensus disorder prediction 69 93 - -
Tsu08g00887 264 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Tsu08g00887 264 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Tsu08g00887 264 MobiDBLite consensus disorder prediction 77 93 - -
Tsu08g00887 264 MobiDBLite consensus disorder prediction 1 22 - -
Tsu08g00887 264 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Tsu08g00887 264 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 259 IPR045174 GO:0003700|GO:0006355
Tsu08g00887 264 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 7 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00887 Tsu-Chr8 9689143 9690906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00887 16 264 C2C2-Dof Transcription Factor Family AT3G61850 49.819 2.58e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g00887 zf-Dof 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00887 - - gmx:778110 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00887 08 9689143 9690906 Tsu08g00887 08 9689143 9690906 ECH