Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00444 ATGCAAGACCCAACAACATTCCAACCCATGAAACCAAATTTTCCAGAACAAGAACAACTTAAATGTCCACGTTGTGaatcaaacaacacaaaattcTGTTACTACAACAACTATAATCTCTCACAACCTCGTCATTTTTGCAAAAACTGTAAAAGGTATTGGACCAAAGGTGGTTCTTTAAGGAACATTCCTGTTGGTGGTGGAACAAGAAAAGTCACAAAACGTTCATCAAATTCCAAAcgttcaacaacaacaacaccatcttcatcttcttcagctCAAGTTTCTTCAGTTTCAGAATCTGACCCGACCCAGATTAAGAATAACCCGGTTGAGGCAAACCAAAGGGTTTTTGGTGGAGGGAGTTTTAGTTCACTTCTTGCATCAAGTGAGCGATTTGGGAATCTTTTTGAGGGTCTGAATTCAAATGGGTCGGGTTTAAAAATGGTGCAAATGGGTGAATTTGGGGAGAATTTGAACTGTGACCCGGCTGGGAATTCTGATTCGGGTCATAATAACCCGACTGGTAGACATGGTGAATCAGAGATTTTTCTTGGTTTGCAAAATGGTGGTAGTGATTCAAGTTGTTGGAATGGTAATCATGGTTGGTCTGATCTTGCAATATATACACCTAGCTCAAGTTATCAGTAG 651 0.3656 MQDPTTFQPMKPNFPEQEQLKCPRCESNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGTRKVTKRSSNSKRSTTTTPSSSSSAQVSSVSESDPTQIKNNPVEANQRVFGGGSFSSLLASSERFGNLFEGLNSNGSGLKMVQMGEFGENLNCDPAGNSDSGHNNPTGRHGESEIFLGLQNGGSDSSCWNGNHGWSDLAIYTPSSSYQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00444 216 MobiDBLite consensus disorder prediction 64 112 - -
Tsu08g00444 216 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Tsu08g00444 216 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Tsu08g00444 216 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Tsu08g00444 216 MobiDBLite consensus disorder prediction 78 112 - -
Tsu08g00444 216 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 216 IPR045174 GO:0003700|GO:0006355
Tsu08g00444 216 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00444 Tsu-Chr8 4372997 4374734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00444 5 137 C2C2-Dof Transcription Factor Family AT1G51700 53.901 1.18e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g00444 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00444 - - gmx:100790822 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00444 08 4372997 4374734 Tsu08g00444 08 4372997 4374734 ECH