Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00977 ATGCAATCATCAaacggtggtggtggtggtaatTCTGATTCCAAACCAAACGAACACCGTTCAAACAAAACGCCGCCACATTCACTTACTTTACCACCACATCAACAGTGGATTCCGATGCAATATCCAGCCGCTGCAATGGTAATGCCACATCATATGTTACCGCCTCAACATTATGCGCCGCCACCGCATCATTATTTAccttatcattatcatcatcaacaacatcacGTGCCTCACGTGCATCATCATGGATCTAGTGCTGATAATAAGACCATCTGGGTCGGTGATTTACATCATTGGATGGATGAGAATTATCTTCACCGTTGTTTTGCTTCAACCGGCgagATTTTCTCGATTAAGGTTATTCGCAATAAGCAGACTGGACAAACGGAGGGTTATGGATTTGTGGAATTCCATTCACATGGGACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATGTTGATGCCTAACACAGAGCAATATTTCCGCCTTAACTGGGCGACATTTAGCACAGGAGATCATAAACGCTCAGATAATGTTCCTGATCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCTTGAAACTTTTTCTAATAGATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGACAAAGGctatgaatgaaatgaatggTGTTTACTGCTCTAGTAGGCCTATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACACCTAGCCAATCTGAAGCTGATTCTACAAATACAACTATATTTGTGGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTAAGACAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATCCCTGTCGGAAAAGGATGTGGTTTTGTACAATTTGCCAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAACGGTACAACAATTGGCAAGCAAACCGTCCGCCTTTCTTGGGGTCGCAATCCGGCAAATAAGCAGTTTAGAACGGATTTTGGCAGTCCCTGGAATTCGCCGGCGTATTATGGAGGAGCTGTATATGATGGCTATGGATATGCTTTGCCGCATCCTCATGACCCGAGCATGTATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGACACCAACAACAAGTAGGGACAATAGAAATCTCATTAATTCATTCATGTGCGTCACTAATTAGTGAGATATTTGGCTACATTAAGAGAGTCATTGTTAATGTCGTCGTTCTCTATGTCACTATTTACGCTCGAGTCCTTGATCACTTAGATGATGTGGAGCTGGATTGGGACAGAGGTATCTTCACCCAACACGTTTCAATGGCACAATTTTCTGTCTCCTCTCTCTGCTCTTCACCTTCTCTTCGTCTTCGACTTCACCGGCAGCATCAACAATTATTCTTCCCTTCTCAACAAATCGCATCTCCACCACCTCCTCCTGCTTCCGCAACTGATTCCAACTCCACTTCCACTTTCGCTTCACCTTCAAATCACACGCCCAAAGTCGTCGTCACCAGAGAACGCGGCAAGAATTCCAAGCTTATCACTGCTTTGGCGAAACATGAAATCAATTGTTTGGAGCTTCCACTCATTGAGCACCAACGGGGAGCAGATTTCGACAGGCTTCCTAGTGCGTTAAGTGATAACGCTTTTGACTGGGTTGTCATAACTTCTCCTGAGGCTGGTTCAGTCTTTCTAGATGCATGGAGAGCTGCTGGGATGCCTCATGTCAGAATAGGCGTTGTTGGATCAGGTACTGCTAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCAATCACTTGATGTTGCCTTTACACCATCAAAAGCAACCGGAAAAGTTTTGGCTACAGAGCTTCCcaaaattggaaataaaacCACCATTCTTTATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGACTTTCAAGTCGTGGATTTGAAGTTACAAGAATGAATACATATACAACGGTAAAATAG 2109 0.4211 MQSSNGGGGGNSDSKPNEHRSNKTPPHSLTLPPHQQWIPMQYPAAAMVMPHHMLPPQHYAPPPHHYLPYHYHHQQHHVPHVHHHGSSADNKTIWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTGQTEGYGFVEFHSHGTAEKVLQNYAGMLMPNTEQYFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDSMLLETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTKAMNEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTPSQSEADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRTDFGSPWNSPAYYGGAVYDGYGYALPHPHDPSMYAAAYGAYPIYGGHQQQVGTIEISLIHSCASLISEIFGYIKRVIVNVVVLYVTIYARVLDHLDDVELDWDRGIFTQHVSMAQFSVSSLCSSPSLRLRLHRQHQQLFFPSQQIASPPPPPASATDSNSTSTFASPSNHTPKVVVTRERGKNSKLITALAKHEINCLELPLIEHQRGADFDRLPSALSDNAFDWVVITSPEAGSVFLDAWRAAGMPHVRIGVVGSGTASIFKEALQSSNQSLDVAFTPSKATGKVLATELPKIGNKTTILYPASAKASNEIEEGLSSRGFEVTRMNTYTTVK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00977 702 CDD RRM3_NGR1_NAM8_like 289 360 - -
Tsu07g00977 702 Gene3D - 184 260 IPR012677 -
Tsu07g00977 702 SUPERFAMILY RNA-binding domain, RBD 52 173 IPR035979 GO:0003676
Tsu07g00977 702 Pfam Uroporphyrinogen-III synthase HemD 554 700 IPR003754 GO:0004852|GO:0033014
Tsu07g00977 702 MobiDBLite consensus disorder prediction 261 294 - -
Tsu07g00977 702 SUPERFAMILY RNA-binding domain, RBD 184 363 IPR035979 GO:0003676
Tsu07g00977 702 CDD RRM2_SECp43_like 184 263 - -
Tsu07g00977 702 CDD HemD 543 701 IPR003754 GO:0004852|GO:0033014
Tsu07g00977 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Tsu07g00977 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Tsu07g00977 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
Tsu07g00977 702 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 30 419 - -
Tsu07g00977 702 Gene3D - 266 369 IPR012677 -
Tsu07g00977 702 MobiDBLite consensus disorder prediction 1 15 - -
Tsu07g00977 702 CDD RRM1_SECp43_like 92 172 - -
Tsu07g00977 702 Gene3D - 90 170 IPR012677 -
Tsu07g00977 702 Gene3D - 585 695 IPR036108 GO:0004852|GO:0033014
Tsu07g00977 702 MobiDBLite consensus disorder prediction 511 548 - -
Tsu07g00977 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Tsu07g00977 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 355 IPR000504 GO:0003723
Tsu07g00977 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Tsu07g00977 702 SUPERFAMILY HemD-like 542 701 IPR036108 GO:0004852|GO:0033014
Tsu07g00977 702 SMART rrm1_1 92 167 IPR000504 GO:0003723
Tsu07g00977 702 SMART rrm1_1 186 260 IPR000504 GO:0003723
Tsu07g00977 702 SMART rrm1_1 291 358 IPR000504 GO:0003723
Tsu07g00977 702 MobiDBLite consensus disorder prediction 525 542 - -
Tsu07g00977 702 MobiDBLite consensus disorder prediction 265 294 - -
Tsu07g00977 702 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 419 - -
Tsu07g00977 702 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00977 Tsu-Chr7 8028388 8041799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00977 76 369 Eukaryotic Initiation Factors Gene Family AT4G34110 28.477 7.25e-29 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00977 07 8028388 8041799 Tsu07g00977 07 8028388 8041799 ECH
Tsu01g00368 01 3129290 3134105 Tsu07g00977 07 8028388 8041799 PCT