Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00895 ATGGCTATGGAAGCACTTAACTCTCCTACCACCGCTACTCCTTTCACTCCTTTTGAAGAACCAAATCACAGTTACATCGATGCAGCACCTTGGACTAAAGGTAAACGTTCTAAACGTTCTCGTGTGGATCAATCTTCTTGTACTGAAGAAGAGTATCTCGCTCTTTGTCTCATCATGCTAGCTCGCGGCGGCAACGACAACCACCACCTTGTCAACAACAAGATTACTCTCCCCACCGCCGTCAAACCTGCTCTATCTGATACTGAATCAGCACCTGCTAAACTCAGTCACAAATGCTCTGTTTGCAACAAAGCTTTTTCATCTTATCAAGCACTTGGTGGACACAAAGCCAGTCACCGGAAGCTTGCTGTTATGGCAAATACCGAAGATCAGACTACTACAACTTCATCCGCCGTGACTACAAGCTCTGCTGCATCCAACGGTAAGATCAAGTCTCATGAATGTTCCATCTGTCATAAATCTTTTCCTACTGGACAAGCTTTGGGAGGACACAAGCGTTGTCACTATGAAGGTGGAAACAGCCACCACAGCACCGTAACTGCATCTGAAGTTGGATCTTCTCACAGTCACCACCGTGATTTTGATCTTAATCTCCCTGCTTTTCCGGACTTTTCAAAGAAGTTTTTGGTTGATGATGAAGTTTCCAGCCCTCATCCTGCAGCCAAGAAGCCTTGTCTTTTCAAGATTGAAATTCCTCAATATTGA 726 0.449 MAMEALNSPTTATPFTPFEEPNHSYIDAAPWTKGKRSKRSRVDQSSCTEEEYLALCLIMLARGGNDNHHLVNNKITLPTAVKPALSDTESAPAKLSHKCSVCNKAFSSYQALGGHKASHRKLAVMANTEDQTTTTSSAVTTSSAASNGKIKSHECSICHKSFPTGQALGGHKRCHYEGGNSHHSTVTASEVGSSHSHHRDFDLNLPAFPDFSKKFLVDDEVSSPHPAAKKPCLFKIEIPQY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00895 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Tsu07g00895 241 SMART c2h2final6 153 175 IPR013087 -
Tsu07g00895 241 SMART c2h2final6 97 119 IPR013087 -
Tsu07g00895 241 PANTHER ZINC FINGER PROTEIN ZAT10 1 232 - -
Tsu07g00895 241 SUPERFAMILY beta-beta-alpha zinc fingers 97 175 IPR036236 -
Tsu07g00895 241 Pfam C2H2-type zinc finger 97 121 - -
Tsu07g00895 241 Pfam C2H2-type zinc finger 153 176 - -
Tsu07g00895 241 MobiDBLite consensus disorder prediction 1 21 - -
Tsu07g00895 241 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Tsu07g00895 241 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Tsu07g00895 241 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 232 IPR044653 GO:0003700
Tsu07g00895 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 175 IPR013087 -
Tsu07g00895 241 MobiDBLite consensus disorder prediction 1 18 - -
Tsu07g00895 241 Gene3D Classic Zinc Finger 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00895 Tsu-Chr7 7314783 7316381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00895 1 238 C2H2 Transcription Factor Family AT1G27730 48.996 1.36e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g00895 zf-C2H2_6 2.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00895 07 7314783 7316381 Tsu01g04701 01 54326646 54327928 ECH
Tsu07g00895 07 7314783 7316381 Tsu07g00895 07 7314783 7316381 ECH
Tsu01g00451 01 3837368 3838700 Tsu07g00895 07 7314783 7316381 PCT