Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00889 ATGGAACGAACCTTCAATTTCAACGATAATTCATCTTCCGCTTTCAGCGACTGCAACAGTGATAGATCTGGAGAATTCATCACTGCATCTACACAAAACCGTCGCCTTCTGATTTCATGTAATAACTCCGACGAACTCATTCGCCGGTTGGTTTTCGATCTTCAATCATGTTCGATTGATCAACAAAAACAAGCCACAATGGAAATCAGATTACTAGCCAAAAACAAATCAGATAACCGTCTCAGAATCGCGAAAGCTGGAGCTATTAAACCGTTAGTTTCGCTTCTATCTTCGCCGGTGGTGGACCTTCAGCTGCAAGAATACGTCGTCACTGCGATTTTGAATCTCTCTTTATGTGACGAGAATAAAGATATTATTGCTTCTTCTGGAGCGATTAAGCCTATGGTGAGAGCATTGAAGATAGGAACTCCAACAGCGAAGGAGAATGCGGCGTGTGCTCTGCTTCGTCTCTCGCAGACAGAGGAAAACAAAGCGGCAATTGGAAGATATGGAGGCATTCCGCCATTGGTGAACCTTCTAGAAAATGGAGGTATCCGTGGCAAGAAAGACGCGTCGACGGCGCTGTATACACTTTGTTCGGTGAAGGAGAATAAAATTAGAGCGGTGAAGGCTGGGATTATGAAGCCTTTAGTGGAATTAATGGCGGATTTGGATTCTAATATGGTTGATAAATCGGCGTATGTGATGAGCGTGTTGGTGACGGTTATGGACGCGAGAACGGCGTTGGTGGAGGAAGGAGGGATTCCGGTGTTGGTGGAAATTGTGGAGATAGGATCGCAGAGACAGAAGGAAATAGCGGTGGTGATATTGTTGAAGATTTGTGAAGAGAATGTTAGTTATCGGATAATGGTGCGTCGTGAAGGTGCTATTCCTCCGTTGGTTTGTCTTTCTCAGTCCGGTACCGATCGCGCCAAAGGAAAGGTGGAGACACTAATAGAACTTCTACGGCAACCAAGATCAAGCAACCCCACTGCATGTGCCTCATAA 1008 0.4534 MERTFNFNDNSSSAFSDCNSDRSGEFITASTQNRRLLISCNNSDELIRRLVFDLQSCSIDQQKQATMEIRLLAKNKSDNRLRIAKAGAIKPLVSLLSSPVVDLQLQEYVVTAILNLSLCDENKDIIASSGAIKPMVRALKIGTPTAKENAACALLRLSQTEENKAAIGRYGGIPPLVNLLENGGIRGKKDASTALYTLCSVKENKIRAVKAGIMKPLVELMADLDSNMVDKSAYVMSVLVTVMDARTALVEEGGIPVLVEIVEIGSQRQKEIAVVILLKICEENVSYRIMVRREGAIPPLVCLSQSGTDRAKGKVETLIELLRQPRSSNPTACAS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00889 335 Gene3D - 19 187 IPR011989 -
Tsu07g00889 335 SUPERFAMILY ARM repeat 43 328 IPR016024 -
Tsu07g00889 335 Gene3D - 188 329 IPR011989 -
Tsu07g00889 335 Pfam Armadillo/beta-catenin-like repeat 161 200 IPR000225 GO:0005515
Tsu07g00889 335 Pfam Armadillo/beta-catenin-like repeat 77 117 IPR000225 GO:0005515
Tsu07g00889 335 Pfam Armadillo/beta-catenin-like repeat 120 158 IPR000225 GO:0005515
Tsu07g00889 335 PANTHER U BOX DOMAIN-CONTAINING 3 330 - -
Tsu07g00889 335 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 87 131 IPR000225 GO:0005515
Tsu07g00889 335 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 3 330 - -
Tsu07g00889 335 SMART arm_5 76 118 IPR000225 GO:0005515
Tsu07g00889 335 SMART arm_5 242 282 IPR000225 GO:0005515
Tsu07g00889 335 SMART arm_5 201 241 IPR000225 GO:0005515
Tsu07g00889 335 SMART arm_5 119 159 IPR000225 GO:0005515
Tsu07g00889 335 SMART arm_5 160 200 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00889 Tsu-Chr7 7283965 7287468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00889 47 329 U-box Gene Family AT2G23140 49.470 1.96e-80 255
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00457 01 3895172 3897243 Tsu07g00889 07 7283965 7287468 PCT