Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00879 ATGGCTTTTGCAGGAACAACTCAAAAGTGCATGTCTTGTGACAAAACTGTTTATCTTGTTGATAAGTTGACTGCAGATAACCGAGTTTACCACAAAGGTTGCTTCCGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGACCAACTCTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTTGAAGGTACACCAAAAATTGCTAAACCAGAAAAAACCAGTGATACTGAGAAACCTGCAGCAGCCAAAGTGTCTAGCATGTTTGGTGGTACCAGAGAGAAATGTGCTGGTTGTCAAAAAACAGTTTACCCTACTGAAAAGGTTAGTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCATTCATGGAGGGTGTGTTATAAGTCCTTCCAATTACATTGCACATGAAGGAAAACTCTATTGTAAACATCACCATATCCAGCTTATCAAGGAGAAGGGTAATTTAAGCCAGCTTGAAGGTGATCATGAGAAGAATGCTAGCATTGAAGTAGTTGCAGCtgagaaatga 579 0.3972 MAFAGTTQKCMSCDKTVYLVDKLTADNRVYHKGCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTSDTEKPAAAKVSSMFGGTREKCAGCQKTVYPTEKVSVNGTPYHKSCFKCIHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKNASIEVVAAEK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00879 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Tsu07g00879 192 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 1 187 - -
Tsu07g00879 192 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Tsu07g00879 192 Pfam LIM domain 110 164 IPR001781 -
Tsu07g00879 192 Pfam LIM domain 10 64 IPR001781 -
Tsu07g00879 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Tsu07g00879 192 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Tsu07g00879 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Tsu07g00879 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Tsu07g00879 192 Gene3D Cysteine Rich Protein 105 174 - -
Tsu07g00879 192 Gene3D Cysteine Rich Protein 4 74 - -
Tsu07g00879 192 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Tsu07g00879 192 CDD LIM2_SF3 110 170 - -
Tsu07g00879 192 PANTHER OS06G0237300 PROTEIN 1 187 IPR045268 GO:0051015
Tsu07g00879 192 CDD LIM1_SF3 6 68 - -
Tsu07g00879 192 SMART lim_4 9 61 IPR001781 -
Tsu07g00879 192 SMART lim_4 109 161 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00879 Tsu-Chr7 7204641 7206907 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tsu07g00879 LIM 5.6e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00464 01 3969409 3971635 Tsu07g00879 07 7204641 7206907 PCT